Variant report

Variant	rs4873303
Chromosome Location	chr8:49922675-49922676
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10957317	0.91[EUR][1000 genomes]
rs10957363	0.80[ASN][1000 genomes]
rs11990854	0.84[CEU][hapmap];0.91[CHB][hapmap];0.82[JPT][hapmap]
rs12545097	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12680366	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13268440	0.80[ASN][1000 genomes]
rs1511363	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1567555	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1828495	0.95[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2137013	0.96[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2385127	0.87[ASN][1000 genomes]
rs2385229	0.80[ASN][1000 genomes]
rs4873093	0.96[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.89[GIH][hapmap];0.90[JPT][hapmap];0.95[MEX][hapmap];0.91[TSI][hapmap];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6983929	0.85[CEU][hapmap];0.91[CHB][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs6984804	0.94[ASW][hapmap];0.81[CEU][hapmap];0.91[CHB][hapmap];0.84[CHD][hapmap];0.82[JPT][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs7005693	0.84[CEU][hapmap];0.91[CHB][hapmap];0.82[JPT][hapmap]
rs7011891	0.85[CEU][hapmap];0.91[CHB][hapmap];0.84[CHD][hapmap];0.95[MEX][hapmap];0.89[TSI][hapmap]
rs7013425	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7835336	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs974781	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv6181	chr8:49885342-49930514	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs4873303	C8orf22	cis	Muscle Skeletal	GTEx
rs4873303	SNTG1	cis	cerebellum	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:49920600-49923000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr8:49921600-49922800	Weak transcription	Psoas Muscle	Psoas
3	chr8:49922000-49923000	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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