Variant report

Variant	rs4873304
Chromosome Location	chr8:49922733-49922734
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10435574	0.81[EUR][1000 genomes]
rs10435612	0.84[EUR][1000 genomes]
rs10504070	0.91[EUR][1000 genomes]
rs10504072	0.84[EUR][1000 genomes]
rs10808744	0.84[EUR][1000 genomes]
rs10808745	0.84[EUR][1000 genomes]
rs10957337	0.94[EUR][1000 genomes]
rs10957356	0.91[EUR][1000 genomes]
rs10957357	0.82[EUR][1000 genomes]
rs11778863	0.95[EUR][1000 genomes]
rs11784268	0.95[EUR][1000 genomes]
rs12056536	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12546490	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12549138	0.80[EUR][1000 genomes]
rs1511359	0.80[EUR][1000 genomes]
rs1511365	0.91[EUR][1000 genomes]
rs17642290	0.86[ASN][1000 genomes]
rs2292399	0.84[EUR][1000 genomes]
rs28685207	0.80[EUR][1000 genomes]
rs35282337	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4406405	0.95[EUR][1000 genomes]
rs4873092	0.91[EUR][1000 genomes]
rs4873096	0.82[EUR][1000 genomes]
rs4873300	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4873306	0.95[EUR][1000 genomes]
rs4873307	0.95[EUR][1000 genomes]
rs4873309	0.82[EUR][1000 genomes]
rs4873312	0.84[EUR][1000 genomes]
rs55795863	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56057508	0.84[EUR][1000 genomes]
rs56074306	0.95[EUR][1000 genomes]
rs56078938	0.90[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs60449482	0.91[EUR][1000 genomes]
rs62507167	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62507177	0.92[EUR][1000 genomes]
rs62507178	0.84[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs62507245	0.80[EUR][1000 genomes]
rs6997703	0.81[EUR][1000 genomes]
rs7817571	0.81[EUR][1000 genomes]
rs7820270	0.90[EUR][1000 genomes]
rs974780	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv6181	chr8:49885342-49930514	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:49920600-49923000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr8:49921600-49922800	Weak transcription	Psoas Muscle	Psoas
3	chr8:49922000-49923000	Weak transcription	ES-I3 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links