Variant report

Variant	rs4873311
Chromosome Location	chr8:49990075-49990076
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:49977011..49978877-chr8:49988078..49990673,2	K562	blood:
2	chr8:49990025..49992623-chr8:49996686..49998822,3	K562	blood:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10448011	0.93[EUR][1000 genomes]
rs12056729	0.93[EUR][1000 genomes]
rs12550346	0.94[EUR][1000 genomes]
rs12674652	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13248468	0.93[EUR][1000 genomes]
rs13250382	0.98[EUR][1000 genomes]
rs13278300	0.95[EUR][1000 genomes]
rs13279209	0.83[AFR][1000 genomes]
rs1467089	0.81[AMR][1000 genomes]
rs1511364	0.83[AFR][1000 genomes]
rs16922692	0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs16939396	0.98[EUR][1000 genomes]
rs16939398	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16939408	0.98[EUR][1000 genomes]
rs16939444	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16939445	0.95[EUR][1000 genomes]
rs1876718	0.95[EUR][1000 genomes]
rs2667282	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2891720	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs33961425	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs34381258	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs36043856	0.83[AFR][1000 genomes]
rs3735973	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs4510886	0.93[EUR][1000 genomes]
rs4873316	0.93[EUR][1000 genomes]
rs59888224	0.93[EUR][1000 genomes]
rs72640596	1.00[AFR][1000 genomes]
rs9650217	0.86[CHB][hapmap];0.90[JPT][hapmap];1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025068	chr8:49953397-50370208	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	esv3401785	chr8:49986448-50018640	Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Weak transcription Genic enhancers Flanking Active TSS Strong transcription	Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
3	nsv968545	chr8:49990010-49993737	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:49984600-49991400	Weak transcription	K562	blood
2	chr8:49987200-49998800	Weak transcription	Psoas Muscle	Psoas
3	chr8:49989000-49990800	Weak transcription	Gastric	stomach
4	chr8:49989000-49990800	Weak transcription	Skeletal Muscle Female	skeletal muscle

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