Variant report

Variant	rs4884006
Chromosome Location	chr13:76101080-76101081
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:76101020..76103303-chr13:76108939..76111291,2	K562	blood:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs1041007	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4340196	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4884007	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7334871	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7336498	1.00[CEU][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761803	chr13:75943309-76161774	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv900562	chr13:76072743-76176680	Active TSS Strong transcription Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
3	nsv900563	chr13:76093935-76169347	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
4	nsv900564	chr13:76100090-76156136	Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:76089000-76104800	Weak transcription	NHDF-Ad	bronchial
2	chr13:76093600-76109400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr13:76094400-76101800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr13:76095600-76109200	Weak transcription	Gastric	stomach
5	chr13:76095800-76111400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr13:76096600-76101800	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr13:76096600-76107400	Weak transcription	Fetal Intestine Small	intestine
8	chr13:76096600-76110400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr13:76096600-76111400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr13:76096800-76104400	Weak transcription	Primary B cells from cord blood	blood
11	chr13:76097000-76111000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr13:76097000-76111600	Weak transcription	Spleen	Spleen
13	chr13:76097400-76104800	Weak transcription	GM12878-XiMat	blood
14	chr13:76097400-76106200	Weak transcription	Brain Hippocampus Middle	brain
15	chr13:76097600-76106200	Weak transcription	Fetal Lung	lung
16	chr13:76097600-76107400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr13:76097800-76107200	Weak transcription	Fetal Stomach	stomach
18	chr13:76097800-76110400	Weak transcription	Brain Angular Gyrus	brain
19	chr13:76097800-76110600	Weak transcription	Fetal Brain Male	brain
20	chr13:76097800-76110600	Weak transcription	Fetal Kidney	kidney
21	chr13:76097800-76110600	Weak transcription	Psoas Muscle	Psoas
22	chr13:76097800-76111200	Weak transcription	Placenta Amnion	Placenta Amnion
23	chr13:76098000-76104200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
24	chr13:76098000-76107600	Weak transcription	Cortex derived primary cultured neurospheres	brain
25	chr13:76098000-76110400	Weak transcription	A549	lung
26	chr13:76098000-76110400	Weak transcription	HUVEC	blood vessel
27	chr13:76098000-76110600	Weak transcription	Brain Anterior Caudate	brain
28	chr13:76098000-76110600	Weak transcription	Rectal Smooth Muscle	rectum
29	chr13:76098000-76111200	Weak transcription	Aorta	Aorta
30	chr13:76098200-76107400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr13:76098200-76107400	Weak transcription	NHLF	lung
32	chr13:76098200-76108200	Weak transcription	NHEK	skin
33	chr13:76098200-76109600	Weak transcription	Brain Germinal Matrix	brain
34	chr13:76098200-76110400	Weak transcription	Brain Inferior Temporal Lobe	brain
35	chr13:76098400-76103800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
36	chr13:76098400-76110200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
37	chr13:76098600-76104400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
38	chr13:76098600-76111000	Weak transcription	Colonic Mucosa	Colon
39	chr13:76098800-76110400	Weak transcription	Brain Cingulate Gyrus	brain
40	chr13:76098800-76111400	Weak transcription	Esophagus	oesophagus
41	chr13:76099200-76101400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
42	chr13:76099200-76102400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
43	chr13:76099200-76104200	Strong transcription	Primary T cells fromperipheralblood	blood
44	chr13:76099200-76107400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
45	chr13:76099400-76102000	Strong transcription	Duodenum Mucosa	Duodenum
46	chr13:76099400-76102000	Strong transcription	Duodenum Smooth Muscle	Duodenum
47	chr13:76099400-76102200	Strong transcription	Fetal Thymus	thymus
48	chr13:76099400-76102200	Strong transcription	Dnd41	blood
49	chr13:76099400-76102400	Strong transcription	Stomach Smooth Muscle	stomach
50	chr13:76099400-76102600	Strong transcription	Primary hematopoietic stem cells	blood

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