Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11149021	0.82[EUR][1000 genomes]
rs12869381	0.82[EUR][1000 genomes]
rs12869533	0.82[EUR][1000 genomes]
rs12869683	0.82[EUR][1000 genomes]
rs1461987	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1585530	0.86[ASN][1000 genomes]
rs1590905	0.83[ASN][1000 genomes]
rs1912034	0.82[EUR][1000 genomes]
rs2126356	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4608217	0.82[EUR][1000 genomes]
rs7490790	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9544123	0.82[EUR][1000 genomes]
rs9544125	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9544128	0.91[EUR][1000 genomes]
rs9544165	0.81[EUR][1000 genomes]
rs9544178	0.83[CEU][hapmap]
rs9565218	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs9565219	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs9573780	0.83[EUR][1000 genomes]
rs9573783	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832649	chr13:76424872-76657891	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv1054431	chr13:76460431-76885094	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv541837	chr13:76460431-76885094	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv516991	chr13:76610127-76634901	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv455988	chr13:76610561-76662923	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv562363	chr13:76610561-76662923	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:76623000-76623800	Enhancers	Brain Hippocampus Middle	brain
2	chr13:76623000-76623800	Enhancers	Brain Inferior Temporal Lobe	brain
3	chr13:76623000-76626000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr13:76623400-76623800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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