Variant report

Variant	rs4884502
Chromosome Location	chr13:64210398-64210399
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 58 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10507702	0.85[JPT][hapmap]
rs1530404	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17088713	1.00[EUR][1000 genomes]
rs17289812	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17368232	0.87[EUR][1000 genomes]
rs1809675	0.85[JPT][hapmap]
rs2590922	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2590925	0.87[EUR][1000 genomes]
rs3866531	0.85[JPT][hapmap]
rs4883719	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4884503	1.00[EUR][1000 genomes]
rs4884504	1.00[EUR][1000 genomes]
rs9564091	1.00[EUR][1000 genomes]
rs9564092	1.00[EUR][1000 genomes]
rs9564108	1.00[JPT][hapmap]
rs9570967	0.87[EUR][1000 genomes]
rs9570977	1.00[EUR][1000 genomes]
rs9570982	1.00[EUR][1000 genomes]
rs9570983	1.00[EUR][1000 genomes]
rs9570985	1.00[EUR][1000 genomes]
rs9570986	1.00[EUR][1000 genomes]
rs9570987	1.00[EUR][1000 genomes]
rs9570988	1.00[EUR][1000 genomes]
rs9570989	1.00[EUR][1000 genomes]
rs9570996	1.00[EUR][1000 genomes]
rs9570997	1.00[EUR][1000 genomes]
rs9570998	1.00[EUR][1000 genomes]
rs9570999	1.00[EUR][1000 genomes]
rs9571000	1.00[EUR][1000 genomes]
rs9571001	1.00[EUR][1000 genomes]
rs9571004	1.00[EUR][1000 genomes]
rs9571054	0.85[JPT][hapmap]
rs981289	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:25 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039661	chr13:63736333-64287558	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv541801	chr13:63736333-64287558	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1042265	chr13:63945130-64471230	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
4	nsv917273	chr13:63998155-64344377	Enhancers ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv900312	chr13:64050360-64270259	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv900313	chr13:64050360-64279866	Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats	lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv1035413	chr13:64115552-64348712	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
8	nsv900314	chr13:64133015-64357838	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
9	nsv1048708	chr13:64133698-64382448	Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
10	nsv541805	chr13:64133698-64382448	Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
11	esv1843972	chr13:64139074-64217694	Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription	lncRNA	3 gene(s)	inside rSNPs	n/a
12	nsv900315	chr13:64164086-64241239	Enhancers Active TSS Flanking Active TSS Weak transcription	lncRNA	1 gene(s)	inside rSNPs	diseases
13	nsv1040762	chr13:64173948-64307519	Enhancers Active TSS Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
14	nsv1040459	chr13:64173948-64321869	Active TSS Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
15	nsv1050067	chr13:64173948-64405310	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
16	nsv1044017	chr13:64179828-64307519	Enhancers Active TSS Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
17	nsv1048830	chr13:64180438-64311124	Enhancers Active TSS Flanking Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
18	nsv541806	chr13:64180438-64311124	Weak transcription Active TSS Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
19	nsv524746	chr13:64184453-64343819	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
20	nsv455912	chr13:64193224-64241239	Active TSS Enhancers Weak transcription Flanking Active TSS	lncRNA	1 gene(s)	inside rSNPs	diseases
21	nsv561912	chr13:64193224-64241239	Active TSS Enhancers Flanking Active TSS Weak transcription	lncRNA	1 gene(s)	inside rSNPs	diseases
22	nsv561913	chr13:64194660-64241239	Active TSS Enhancers Flanking Active TSS Weak transcription	lncRNA	1 gene(s)	inside rSNPs	diseases
23	nsv561914	chr13:64194660-64242114	Active TSS Enhancers Flanking Active TSS Weak transcription	lncRNA	2 gene(s)	inside rSNPs	diseases
24	nsv455913	chr13:64202642-64210398	Enhancers Active TSS	lncRNA	1 gene(s)	inside rSNPs	n/a
25	nsv561915	chr13:64202642-64210398	Active TSS Enhancers	lncRNA	1 gene(s)	inside rSNPs	n/a

Variant related diseases (count:1)

Disease	PMID	Source
Response to inhaled corticosteroid treatment in asthma (percentage change of FEV1)	24792382	GWAS catalog

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:64210000-64211000	Active TSS	Pancreatic Islets	Pancreatic Islet
2	chr13:64210200-64210400	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr13:64210200-64210400	Enhancers	Dnd41	blood
4	chr13:64210200-64211200	Active TSS	GM12878-XiMat	blood

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