Variant report

Variant	rs4886496
Chromosome Location	chr15:76845496-76845497
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 132 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:122)

rs_ID	r²[population]
rs10444858	0.86[ASN][1000 genomes]
rs11072599	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11072603	0.94[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs1116535	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs1117367	0.95[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs1125932	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs12148452	0.86[ASN][1000 genomes]
rs12148786	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs12148805	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs12148877	0.82[ASN][1000 genomes]
rs12437627	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs12438077	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs12438186	0.82[ASN][1000 genomes]
rs12438540	0.80[ASN][1000 genomes]
rs12440151	0.82[ASN][1000 genomes]
rs12441247	0.93[ASN][1000 genomes]
rs12441433	0.95[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs12441550	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs12443137	0.89[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs12592171	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs12594541	0.85[ASN][1000 genomes]
rs12594577	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs12595313	0.86[ASN][1000 genomes]
rs12898430	0.88[ASN][1000 genomes]
rs12899871	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12900494	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs12902174	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs12902414	0.80[ASN][1000 genomes]
rs12902452	0.82[ASN][1000 genomes]
rs12907805	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12908421	0.94[ASN][1000 genomes]
rs12911987	0.93[CHB][hapmap];0.87[JPT][hapmap]
rs12915248	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12916573	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs1471780	0.94[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs1587381	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17362383	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17364076	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17364330	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17460201	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1838048	0.80[ASN][1000 genomes]
rs1867197	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs1874944	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs1946650	0.98[ASN][1000 genomes]
rs2056544	0.85[ASN][1000 genomes]
rs2083762	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2117369	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2120107	0.95[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs2120108	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs2304920	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs2404602	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs2404736	0.96[ASN][1000 genomes]
rs2404737	0.96[ASN][1000 genomes]
rs2404740	0.95[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs2404741	0.88[ASN][1000 genomes]
rs284895	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2896954	0.89[ASN][1000 genomes]
rs34060246	0.86[ASN][1000 genomes]
rs34272342	0.83[ASN][1000 genomes]
rs34287706	0.80[ASN][1000 genomes]
rs34478400	0.82[ASN][1000 genomes]
rs34707035	0.86[ASN][1000 genomes]
rs34924128	0.86[ASN][1000 genomes]
rs35077207	0.80[ASN][1000 genomes]
rs35138393	0.86[ASN][1000 genomes]
rs35195096	0.80[ASN][1000 genomes]
rs35395069	0.86[ASN][1000 genomes]
rs35498563	0.86[ASN][1000 genomes]
rs35566346	0.94[ASN][1000 genomes]
rs36070630	0.80[ASN][1000 genomes]
rs3816266	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs4079681	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs4442773	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4525456	0.82[ASN][1000 genomes]
rs4633676	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4886799	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4886801	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4886813	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs4886817	0.94[CHB][hapmap];0.94[JPT][hapmap];0.96[ASN][1000 genomes]
rs4886818	0.94[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs4886824	0.85[ASN][1000 genomes]
rs4886825	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs55676827	0.86[ASN][1000 genomes]
rs56193230	0.80[ASN][1000 genomes]
rs56351018	0.93[ASN][1000 genomes]
rs57178708	0.82[ASN][1000 genomes]
rs58361452	0.86[ASN][1000 genomes]
rs58511211	0.93[ASN][1000 genomes]
rs58973160	0.86[ASN][1000 genomes]
rs59088060	0.98[ASN][1000 genomes]
rs60912217	0.84[ASN][1000 genomes]
rs6495206	0.88[ASN][1000 genomes]
rs66754747	0.93[ASN][1000 genomes]
rs66986092	0.80[ASN][1000 genomes]
rs67010831	0.86[ASN][1000 genomes]
rs67204011	0.98[ASN][1000 genomes]
rs67263359	0.80[ASN][1000 genomes]
rs67570291	0.86[ASN][1000 genomes]
rs67920045	0.81[ASN][1000 genomes]
rs71405216	0.94[ASN][1000 genomes]
rs71405222	0.82[ASN][1000 genomes]
rs71405223	0.86[ASN][1000 genomes]
rs7163397	0.80[ASN][1000 genomes]
rs7163946	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7164060	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7164813	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7169394	0.82[ASN][1000 genomes]
rs7174953	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs7179142	0.89[CHB][hapmap];1.00[JPT][hapmap]
rs72738889	0.86[ASN][1000 genomes]
rs7342603	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs7350777	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs7403276	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7495566	0.81[ASN][1000 genomes]
rs8024476	0.86[ASN][1000 genomes]
rs8030411	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs8036703	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs8037005	0.80[ASN][1000 genomes]
rs8039545	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs8040539	0.86[JPT][hapmap]
rs8043474	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs9646213	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv542438	chr15:76697056-76892157	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
2	nsv542439	chr15:76762161-77196336	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
3	esv3440794	chr15:76764595-77571114	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
4	nsv904400	chr15:76772062-77085283	Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
5	nsv1053924	chr15:76803849-77089079	Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
6	nsv471254	chr15:76811390-76978139	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases
7	nsv570021	chr15:76813920-76978139	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases
8	nsv570022	chr15:76816015-76978139	ZNF genes & repeats Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases
9	nsv904401	chr15:76816015-77085283	Strong transcription Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
10	nsv1042514	chr15:76838221-76906382	Weak transcription ZNF genes & repeats Enhancers Active TSS Strong transcription Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:76805600-76845800	Weak transcription	Primary T cells from cord blood	blood
2	chr15:76842400-76845600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
3	chr15:76842600-76845600	Weak transcription	Lung	lung
4	chr15:76842600-76845800	Weak transcription	Spleen	Spleen
5	chr15:76842800-76846200	Weak transcription	Primary T helper cells fromperipheralblood	blood
6	chr15:76843000-76853400	Weak transcription	Brain Hippocampus Middle	brain
7	chr15:76843600-76846000	Weak transcription	Primary T helper cells PMA-I stimulated	--
8	chr15:76843800-76850600	Weak transcription	Primary B cells from cord blood	blood
9	chr15:76844200-76846200	Strong transcription	Fetal Intestine Small	intestine
10	chr15:76844400-76846600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr15:76844600-76846000	Strong transcription	Pancreas	Pancrea
12	chr15:76844800-76845600	Weak transcription	Esophagus	oesophagus
13	chr15:76845000-76845800	Enhancers	Right Ventricle	heart
14	chr15:76845200-76845600	Enhancers	Placenta	Placenta
15	chr15:76845200-76846200	Enhancers	Fetal Thymus	thymus
16	chr15:76845200-76846600	Weak transcription	Fetal Stomach	stomach
17	chr15:76845400-76845600	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr15:76845400-76845800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr15:76845400-76846000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr15:76845400-76846000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
21	chr15:76845400-76846000	Enhancers	Left Ventricle	heart
22	chr15:76845400-76846200	Enhancers	Breast Myoepithelial Primary Cells	Breast
23	chr15:76845400-76846200	Enhancers	Primary T cells fromperipheralblood	blood
24	chr15:76845400-76847000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood

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