Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10851888	0.83[CHB][hapmap]
rs11072610	0.83[CHB][hapmap]
rs11637096	0.81[CHB][hapmap]
rs11856717	0.91[CEU][hapmap];0.83[CHB][hapmap]
rs12437981	0.83[CHB][hapmap]
rs12593793	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs1568083	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];0.91[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2047504	0.83[CHB][hapmap]
rs2404734	0.83[CHB][hapmap]
rs2404972	0.81[CEU][hapmap]
rs2454451	0.83[CHB][hapmap]
rs2461872	0.80[CHB][hapmap];0.81[ASN][1000 genomes]
rs35827241	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4886489	0.80[CEU][hapmap];0.90[GIH][hapmap];0.81[MEX][hapmap]
rs4886794	0.81[CEU][hapmap];0.90[GIH][hapmap];0.81[MEX][hapmap]
rs4886816	0.82[CHB][hapmap]
rs4886819	0.83[CHB][hapmap]
rs7181506	0.83[CHB][hapmap]
rs8037847	0.82[CHB][hapmap]
rs965818	0.83[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv542438	chr15:76697056-76892157	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs4886804	SCAPER	Cis_1M	lymphoblastoid	RTeQTL
rs4886804	ISL2	Cis_1M	lymphoblastoid	RTeQTL
rs4886804	ZNF291	cis	multi-tissue	Pritchard

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:76711600-76767200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr15:76720800-76763600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr15:76721600-76740200	Weak transcription	Primary B cells from cord blood	blood
4	chr15:76723000-76739400	Weak transcription	Fetal Intestine Small	intestine
5	chr15:76723000-76757600	Weak transcription	Aorta	Aorta
6	chr15:76724600-76749400	Weak transcription	Primary hematopoietic stem cells	blood
7	chr15:76725800-76754400	Weak transcription	Ovary	ovary
8	chr15:76725800-76812600	Weak transcription	Left Ventricle	heart
9	chr15:76726000-76747200	Weak transcription	Primary T cells from cord blood	blood
10	chr15:76732200-76741200	Weak transcription	Fetal Brain Male	brain
11	chr15:76736600-76741000	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr15:76738400-76739400	Enhancers	GM12878-XiMat	blood

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