Variant report

Variant	rs4886833
Chromosome Location	chr15:77140111-77140112
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11072640	1.00[AMR][1000 genomes]
rs11853683	1.00[AMR][1000 genomes]
rs12905804	0.97[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs2469198	1.00[AMR][1000 genomes]
rs2469207	1.00[AMR][1000 genomes]
rs2469237	1.00[AMR][1000 genomes]
rs280017	0.80[YRI][hapmap]
rs28391551	1.00[AMR][1000 genomes]
rs28402797	1.00[AMR][1000 genomes]
rs28412669	1.00[AMR][1000 genomes]
rs28421596	1.00[AMR][1000 genomes]
rs28508056	1.00[AMR][1000 genomes]
rs28641730	1.00[AMR][1000 genomes]
rs28644501	1.00[AMR][1000 genomes]
rs28744566	1.00[AMR][1000 genomes]
rs3099135	1.00[AMR][1000 genomes]
rs3110376	1.00[AMR][1000 genomes]
rs3110377	1.00[AMR][1000 genomes]
rs3110383	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3110386	1.00[AMR][1000 genomes]
rs7173333	1.00[AMR][1000 genomes]
rs7178723	1.00[AMR][1000 genomes]
rs8026664	1.00[AMR][1000 genomes]
rs8035685	1.00[AMR][1000 genomes]
rs8038253	1.00[AMR][1000 genomes]
rs8038701	1.00[AMR][1000 genomes]
rs9920797	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv542439	chr15:76762161-77196336	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
2	esv3440794	chr15:76764595-77571114	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
3	esv2830013	chr15:76863023-77176158	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1046137	chr15:76892097-77196336	ZNF genes & repeats Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv542442	chr15:76892097-77196336	ZNF genes & repeats Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	esv3367577	chr15:77015618-77442634	Genic enhancers Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:71 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:77111600-77141200	Weak transcription	Thymus	Thymus
2	chr15:77111600-77144000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
3	chr15:77111600-77174200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
4	chr15:77111800-77141600	Weak transcription	Fetal Thymus	thymus
5	chr15:77112200-77196000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr15:77115400-77144600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr15:77116800-77141400	Weak transcription	Lung	lung
8	chr15:77116800-77144000	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr15:77120400-77158400	Weak transcription	Colon Smooth Muscle	Colon
10	chr15:77120800-77143400	Weak transcription	Adipose Nuclei	Adipose
11	chr15:77122000-77141600	Weak transcription	Gastric	stomach
12	chr15:77123000-77141600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr15:77123200-77144800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr15:77123200-77153200	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr15:77123600-77141200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
16	chr15:77123800-77141400	Weak transcription	Right Ventricle	heart
17	chr15:77124400-77149600	Weak transcription	HepG2	liver
18	chr15:77125200-77141400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr15:77125200-77141400	Weak transcription	Duodenum Mucosa	Duodenum
20	chr15:77125600-77141400	Weak transcription	Primary T cells from cord blood	blood
21	chr15:77125600-77142600	Weak transcription	Ovary	ovary
22	chr15:77125800-77175400	Weak transcription	Sigmoid Colon	Sigmoid Colon
23	chr15:77126000-77141400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
24	chr15:77126000-77141400	Weak transcription	Primary B cells from peripheral blood	blood
25	chr15:77126000-77141400	Weak transcription	Fetal Intestine Small	intestine
26	chr15:77126000-77141400	Weak transcription	Dnd41	blood
27	chr15:77126000-77142000	Weak transcription	Primary B cells from cord blood	blood
28	chr15:77126000-77145600	Weak transcription	Aorta	Aorta
29	chr15:77126200-77141800	Weak transcription	Primary hematopoietic stem cells	blood
30	chr15:77126400-77141600	Weak transcription	Monocytes-CD14+_RO01746	blood
31	chr15:77126400-77143000	Weak transcription	Primary T helper cells PMA-I stimulated	--
32	chr15:77127000-77142200	Weak transcription	Primary T cells fromperipheralblood	blood
33	chr15:77127400-77141400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
34	chr15:77127600-77141600	Weak transcription	Duodenum Smooth Muscle	Duodenum
35	chr15:77129600-77141400	Weak transcription	Fetal Brain Female	brain
36	chr15:77130000-77141200	Weak transcription	Fetal Muscle Leg	muscle
37	chr15:77130200-77143600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
38	chr15:77130600-77147400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
39	chr15:77130800-77141600	Weak transcription	Fetal Muscle Trunk	muscle
40	chr15:77130800-77142400	Weak transcription	Primary T helper cells fromperipheralblood	blood
41	chr15:77131200-77155600	Weak transcription	Left Ventricle	heart
42	chr15:77131400-77148000	Weak transcription	Placenta	Placenta
43	chr15:77131800-77144000	Weak transcription	HSMM	muscle
44	chr15:77132600-77142200	Weak transcription	Liver	Liver
45	chr15:77133000-77142800	Weak transcription	Primary neutrophils fromperipheralblood	blood
46	chr15:77133200-77147600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
47	chr15:77133200-77196800	Weak transcription	Rectal Mucosa Donor 31	rectum
48	chr15:77133400-77142600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
49	chr15:77133600-77141400	Weak transcription	Stomach Smooth Muscle	stomach
50	chr15:77133600-77141800	Weak transcription	Brain Angular Gyrus	brain

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