Variant report

Variant	rs4886841
Chromosome Location	chr15:77231158-77231159
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:77229605..77231405-chr15:77232497..77234524,2	K562	blood:
2	chr15:77229268..77231405-chr15:77232856..77234720,3	K562	blood:
3	chr15:77226311..77228173-chr15:77229637..77231808,2	K562	blood:

Variant related genes	Relation type
ENSG00000117906	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1706848	0.92[ASW][hapmap];1.00[CEU][hapmap];0.86[LWK][hapmap];0.84[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1711018	1.00[ASW][hapmap];0.93[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1711019	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1913001	0.94[AFR][1000 genomes]
rs2046415	0.85[ASW][hapmap];0.93[LWK][hapmap];0.87[YRI][hapmap]
rs2046416	0.83[ASW][hapmap];1.00[CEU][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs280026	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2956877	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3099134	0.86[YRI][hapmap]
rs3099136	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3099147	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3102708	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3106376	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6495225	0.92[ASW][hapmap];1.00[CEU][hapmap];0.82[LWK][hapmap];0.84[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7178950	1.00[CEU][hapmap];0.83[YRI][hapmap];0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7183961	0.83[ASW][hapmap];1.00[CEU][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs925492	0.97[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3440794	chr15:76764595-77571114	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	esv3367577	chr15:77015618-77442634	Genic enhancers Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv1040852	chr15:77160237-78137541	Enhancers Flanking Active TSS Active TSS Strong transcription Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
4	esv2758388	chr15:77170550-77373448	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
5	esv2760041	chr15:77170550-77373448	Enhancers Genic enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:77224800-77243000	Weak transcription	Lung	lung
2	chr15:77224800-77256000	Weak transcription	Pancreas	Pancrea
3	chr15:77225000-77240400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
4	chr15:77225000-77240400	Weak transcription	Spleen	Spleen
5	chr15:77225000-77241000	Weak transcription	Colonic Mucosa	Colon
6	chr15:77225000-77242800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr15:77225000-77243000	Weak transcription	Primary neutrophils fromperipheralblood	blood
8	chr15:77225000-77245200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr15:77225000-77245200	Weak transcription	Esophagus	oesophagus
10	chr15:77225000-77247000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr15:77225000-77254600	Weak transcription	Aorta	Aorta
12	chr15:77225000-77260200	Weak transcription	Right Ventricle	heart
13	chr15:77225200-77245200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr15:77225200-77246400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
15	chr15:77225400-77231400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr15:77225400-77232400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
17	chr15:77225400-77238000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr15:77225400-77238800	Weak transcription	Stomach Mucosa	stomach
19	chr15:77225400-77255400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
20	chr15:77225600-77231400	Strong transcription	HSMM	muscle
21	chr15:77225600-77231400	Strong transcription	NH-A	brain
22	chr15:77225600-77232800	Strong transcription	HUES48 Cell Line	embryonic stem cell
23	chr15:77225600-77243600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
24	chr15:77225800-77231200	Strong transcription	Osteobl	bone
25	chr15:77225800-77231800	Strong transcription	HUES6 Cell Line	embryonic stem cell
26	chr15:77225800-77232000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr15:77225800-77232800	Strong transcription	Placenta	Placenta
28	chr15:77225800-77243800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
29	chr15:77225800-77244600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr15:77225800-77245000	Weak transcription	Fetal Heart	heart
31	chr15:77226000-77231600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr15:77226000-77231600	Strong transcription	Fetal Intestine Large	intestine
33	chr15:77226000-77231600	Strong transcription	Fetal Thymus	thymus
34	chr15:77226000-77232000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
35	chr15:77226000-77237000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
36	chr15:77226200-77231400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr15:77226200-77231600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
38	chr15:77226200-77247200	Weak transcription	Fetal Brain Male	brain
39	chr15:77226400-77232000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
40	chr15:77226400-77232400	Strong transcription	H1 Cell Line	embryonic stem cell
41	chr15:77226400-77233000	Strong transcription	HUES64 Cell Line	embryonic stem cell
42	chr15:77226600-77231400	Strong transcription	Primary T cells from cord blood	blood
43	chr15:77227000-77236800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
44	chr15:77227600-77231600	Strong transcription	H9 Cell Line	embryonic stem cell
45	chr15:77227600-77232600	Strong transcription	Primary T helper cells fromperipheralblood	blood
46	chr15:77227800-77231400	Strong transcription	Duodenum Mucosa	Duodenum
47	chr15:77227800-77231400	Strong transcription	A549	lung
48	chr15:77227800-77232600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
49	chr15:77228000-77231200	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
50	chr15:77228000-77231600	Strong transcription	Thymus	Thymus

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