Variant report

Variant	rs488999
Chromosome Location	chr12:118113003-118113004
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1002231	0.90[EUR][1000 genomes]
rs10850884	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11068616	0.86[EUR][1000 genomes]
rs11068617	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11068623	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs11068624	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs11068625	0.92[EUR][1000 genomes]
rs12308097	0.85[EUR][1000 genomes]
rs12309599	0.85[EUR][1000 genomes]
rs492479	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs597780	0.94[EUR][1000 genomes]
rs598670	0.93[EUR][1000 genomes]
rs657724	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73211999	0.95[EUR][1000 genomes]

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:118105400-118118800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr12:118110200-118122600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr12:118112200-118117400	Weak transcription	NHDF-Ad	bronchial
4	chr12:118112400-118114000	Enhancers	HUVEC	blood vessel
5	chr12:118112600-118117400	Weak transcription	NH-A	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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