Variant report

Variant	rs489052
Chromosome Location	chr10:25632132-25632133
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:25630908..25632833-chr10:25633483..25635997,2	MCF-7	breast:

Extended variants
information (count: 160 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:158)

rs_ID	r²[population]
rs10399962	0.87[JPT][hapmap]
rs10508694	1.00[JPT][hapmap]
rs10741075	0.86[CHB][hapmap];0.86[JPT][hapmap];0.87[ASN][1000 genomes]
rs10741077	0.87[CHB][hapmap];1.00[JPT][hapmap]
rs10764539	1.00[JPT][hapmap]
rs10764543	1.00[JPT][hapmap]
rs10828770	1.00[CHB][hapmap];0.86[JPT][hapmap];0.88[ASN][1000 genomes]
rs10828774	0.93[CHB][hapmap];1.00[JPT][hapmap]
rs10828775	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs10828777	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs10828778	0.87[CHB][hapmap];1.00[JPT][hapmap]
rs10828791	1.00[JPT][hapmap]
rs10828792	1.00[JPT][hapmap]
rs10828793	1.00[JPT][hapmap]
rs10828807	0.87[JPT][hapmap]
rs11014490	0.88[ASN][1000 genomes]
rs11014527	0.93[JPT][hapmap]
rs11014528	1.00[JPT][hapmap]
rs11014529	1.00[JPT][hapmap]
rs11014530	1.00[JPT][hapmap]
rs11014550	1.00[JPT][hapmap]
rs11014553	1.00[JPT][hapmap]
rs11014554	1.00[JPT][hapmap]
rs11014558	0.93[JPT][hapmap]
rs11014559	0.87[JPT][hapmap]
rs1122775	0.85[ASN][1000 genomes]
rs1122776	0.86[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs1148154	1.00[JPT][hapmap]
rs11818261	1.00[JPT][hapmap]
rs12240665	1.00[JPT][hapmap]
rs12249852	1.00[JPT][hapmap]
rs12251868	1.00[JPT][hapmap]
rs12251917	1.00[JPT][hapmap]
rs12254479	1.00[JPT][hapmap]
rs12256851	1.00[JPT][hapmap]
rs12258671	1.00[JPT][hapmap]
rs12259043	1.00[JPT][hapmap]
rs12259696	1.00[JPT][hapmap]
rs12358447	1.00[JPT][hapmap]
rs1245966	0.88[ASN][1000 genomes]
rs1245967	0.88[ASN][1000 genomes]
rs12762462	1.00[JPT][hapmap]
rs12773262	1.00[JPT][hapmap]
rs1329259	0.87[CHB][hapmap];1.00[JPT][hapmap]
rs1329263	0.87[CHB][hapmap];1.00[JPT][hapmap]
rs1329264	0.85[ASN][1000 genomes]
rs1329265	0.87[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs1340002	0.93[JPT][hapmap]
rs1341963	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs1341964	0.87[CHB][hapmap];1.00[JPT][hapmap]
rs1341966	0.93[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs1410932	0.87[CHB][hapmap];1.00[JPT][hapmap]
rs1413397	0.86[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs1576317	0.87[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs1576318	0.83[ASN][1000 genomes]
rs1576320	0.81[CHB][hapmap];0.93[JPT][hapmap];0.85[ASN][1000 genomes]
rs1576321	0.85[ASN][1000 genomes]
rs1590836	0.87[CHB][hapmap];1.00[JPT][hapmap]
rs1591249	0.87[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs1591250	0.86[CHB][hapmap];0.93[JPT][hapmap]
rs1612200	0.87[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs1626372	0.85[ASN][1000 genomes]
rs1628986	0.86[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs1630323	0.85[ASN][1000 genomes]
rs1632593	0.85[ASN][1000 genomes]
rs16925850	0.88[JPT][hapmap]
rs1754251	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs1754253	0.86[CHB][hapmap];0.92[JPT][hapmap];0.85[ASN][1000 genomes]
rs1754254	0.85[ASN][1000 genomes]
rs1754255	0.85[ASN][1000 genomes]
rs1754256	0.85[ASN][1000 genomes]
rs1754258	0.85[ASN][1000 genomes]
rs1754260	0.87[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs1754264	0.85[ASN][1000 genomes]
rs1754265	0.85[ASN][1000 genomes]
rs1754268	0.87[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs1754269	0.85[ASN][1000 genomes]
rs1754271	0.84[ASN][1000 genomes]
rs1760716	0.93[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs1760718	0.86[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs1760727	0.86[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs1760728	0.86[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs1760729	0.85[ASN][1000 genomes]
rs1760730	0.85[ASN][1000 genomes]
rs1760733	0.87[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs1760734	0.85[ASN][1000 genomes]
rs1760735	0.85[ASN][1000 genomes]
rs1760755	0.99[ASN][1000 genomes]
rs1760757	0.81[CEU][hapmap]
rs1760758	0.93[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs1760759	0.93[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs1760762	0.87[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs1760763	0.87[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs1760764	0.85[ASN][1000 genomes]
rs1760765	0.85[ASN][1000 genomes]
rs1760766	0.87[CHB][hapmap];1.00[JPT][hapmap]
rs1760767	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs1773607	0.85[ASN][1000 genomes]
rs1773608	0.87[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs1773609	0.85[ASN][1000 genomes]
rs1773612	0.87[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs1773614	0.87[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs1773616	0.86[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs1773617	0.87[CHB][hapmap];1.00[JPT][hapmap]
rs1773618	0.87[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs1773622	0.87[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs1773623	0.87[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs1773625	0.93[JPT][hapmap]
rs1773648	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1773649	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1773650	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1773651	0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1773689	0.81[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs1773690	0.81[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs1812401	0.93[CEU][hapmap];1.00[CHB][hapmap]
rs1855461	0.87[CHB][hapmap];1.00[JPT][hapmap]
rs2262989	0.99[ASN][1000 genomes]
rs2795044	0.86[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs2807245	1.00[ASN][1000 genomes]
rs2807247	0.95[ASN][1000 genomes]
rs2807248	1.00[CHB][hapmap];0.86[JPT][hapmap];0.93[ASN][1000 genomes]
rs2807250	0.93[CHB][hapmap]
rs2807253	1.00[CHB][hapmap];0.93[JPT][hapmap];0.88[ASN][1000 genomes]
rs2807255	0.86[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs4351726	0.87[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs4423091	0.86[ASN][1000 genomes]
rs4431923	1.00[JPT][hapmap]
rs476972	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs489186	0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs495338	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs495456	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs509285	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs516071	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs518751	0.97[ASN][1000 genomes]
rs532538	0.94[CHB][hapmap];0.85[ASN][1000 genomes]
rs541206	1.00[CHB][hapmap];0.94[JPT][hapmap];0.83[YRI][hapmap];0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs543850	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap]
rs545616	0.87[CEU][hapmap]
rs558947	0.93[CHB][hapmap];0.86[JPT][hapmap]
rs573812	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs578033	0.88[ASN][1000 genomes]
rs7079892	0.87[CHB][hapmap];1.00[JPT][hapmap]
rs7091686	0.85[ASN][1000 genomes]
rs7094439	1.00[JPT][hapmap]
rs7100128	0.86[ASN][1000 genomes]
rs722537	0.87[JPT][hapmap]
rs7922827	0.84[ASN][1000 genomes]
rs824144	0.81[CHB][hapmap]
rs824145	1.00[CHB][hapmap];0.87[JPT][hapmap];0.87[ASN][1000 genomes]
rs824146	1.00[CHB][hapmap];0.86[JPT][hapmap];0.87[ASN][1000 genomes]
rs824147	0.93[CHB][hapmap]
rs824590	0.86[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs824592	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs824593	0.85[ASN][1000 genomes]
rs824597	0.86[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs824598	0.87[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs824599	0.81[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs862192	0.80[CHB][hapmap];0.94[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761583	chr10:25525657-25722444	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	esv3349863	chr10:25614571-25946379	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25631200-25632400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr10:25631800-25632200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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