Variant report

Variant	rs4892539
Chromosome Location	chrX:74298674-74298675
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	STAT3	chrX:74298485-74298685	MCF10A-Er-Src	breast:	n/a	n/a
2	E2F4	chrX:74298373-74298807	MCF10A-Er-Src	breast:	n/a	n/a

Variant related genes	Relation type
ABCB7	TF binding region

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs1361828	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs1573169	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs16988567	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs2153984	1.00[CHB][hapmap]
rs2226174	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap]
rs4148831	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs4892530	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs4892558	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs5937963	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs5937967	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs6607496	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs6647074	0.88[MEX][hapmap]
rs6647077	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap]
rs6647563	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap]
rs6647565	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs6647566	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.80[MEX][hapmap];1.00[TSI][hapmap]
rs6647567	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs6647568	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs6647569	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs6647571	1.00[CEU][hapmap]
rs6647574	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs6647577	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap]
rs6647579	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap]
rs6647582	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap]
rs6647583	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916758	chrX:73546406-74420929	Active TSS Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv531128	chrX:74232814-74416887	Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:74265800-74316600	Weak transcription	Primary hematopoietic stem cells	blood
2	chrX:74266000-74303200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chrX:74266200-74304800	Weak transcription	GM12878-XiMat	blood
4	chrX:74268000-74302400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chrX:74270400-74317200	Weak transcription	Primary T cells fromperipheralblood	blood
6	chrX:74286600-74306600	Weak transcription	Small Intestine	intestine
7	chrX:74288800-74306400	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chrX:74289800-74299000	Weak transcription	Liver	Liver
9	chrX:74295200-74300200	Weak transcription	Primary T helper cells fromperipheralblood	blood
10	chrX:74295200-74306800	Weak transcription	Dnd41	blood
11	chrX:74295200-74308000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chrX:74295200-74333800	Weak transcription	Fetal Intestine Large	intestine
13	chrX:74295400-74327200	Weak transcription	Duodenum Mucosa	Duodenum
14	chrX:74295400-74333000	Weak transcription	Primary B cells from peripheral blood	blood
15	chrX:74295800-74302400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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