Variant report

Variant	rs4895183
Chromosome Location	chr5:118216318-118216319
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10519564	1.00[JPT][hapmap];1.00[YRI][hapmap]
rs11949851	0.83[ASN][1000 genomes]
rs12109156	1.00[JPT][hapmap]
rs12187606	1.00[CHB][hapmap];0.95[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs12659444	0.94[GIH][hapmap];0.81[MKK][hapmap]
rs1567521	0.94[ASN][1000 genomes]
rs17132677	1.00[JPT][hapmap]
rs17144708	0.94[ASN][1000 genomes]
rs17144714	1.00[CHB][hapmap]
rs17144715	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.94[ASN][1000 genomes]
rs17144716	1.00[CHB][hapmap];0.95[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.94[ASN][1000 genomes]
rs17144806	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[TSI][hapmap];0.91[YRI][hapmap];0.81[AFR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17144824	1.00[JPT][hapmap]
rs17144836	1.00[JPT][hapmap];0.81[MKK][hapmap];0.91[YRI][hapmap]
rs2115301	1.00[CHB][hapmap]
rs2217310	1.00[JPT][hapmap];0.91[YRI][hapmap]
rs2377127	1.00[JPT][hapmap]
rs370827	0.94[ASN][1000 genomes]
rs3813297	1.00[CHB][hapmap]
rs3813298	1.00[CHB][hapmap]
rs447317	0.94[ASN][1000 genomes]
rs4634381	1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes]
rs4895184	0.82[CHB][hapmap]
rs4895347	0.91[ASN][1000 genomes]
rs4895353	1.00[CHB][hapmap]
rs4895354	1.00[CHB][hapmap]
rs56406364	0.81[AFR][1000 genomes]
rs57581390	0.81[AFR][1000 genomes]
rs6860946	1.00[JPT][hapmap]
rs6861907	0.94[ASN][1000 genomes]
rs6863802	0.91[YRI][hapmap];0.83[AFR][1000 genomes]
rs6871241	1.00[CHB][hapmap];0.89[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.82[YRI][hapmap];0.94[ASN][1000 genomes]
rs6874109	0.82[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.84[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];0.91[TSI][hapmap];0.96[YRI][hapmap];0.87[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs6874399	1.00[JPT][hapmap]
rs6880144	1.00[JPT][hapmap];0.96[YRI][hapmap];0.86[AFR][1000 genomes]
rs6881776	0.94[ASN][1000 genomes]
rs6886240	0.94[ASN][1000 genomes]
rs6892437	1.00[JPT][hapmap]
rs73234489	0.94[ASN][1000 genomes]
rs7709381	0.94[ASN][1000 genomes]
rs7721907	1.00[JPT][hapmap]
rs7722027	0.91[ASN][1000 genomes]
rs7726905	0.84[ASN][1000 genomes]
rs7734815	1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs7737716	0.90[LWK][hapmap];0.86[MKK][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882767	chr5:117931730-118385691	Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Enhancers Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv599562	chr5:118122504-118230640	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv882771	chr5:118170135-118230640	Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv882772	chr5:118173127-118230640	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv882773	chr5:118175640-118241854	Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv599563	chr5:118191798-118241854	Weak transcription Strong transcription ZNF genes & repeats Enhancers Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv526318	chr5:118210835-118221589	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:118209800-118218000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr5:118216000-118224000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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