Variant report

Variant	rs4895759
Chromosome Location	chr6:148945785-148945786
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11155578	0.94[EUR][1000 genomes]
rs11966900	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12528752	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12661735	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17078502	0.84[EUR][1000 genomes]
rs2065147	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35105989	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4895760	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs59522870	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72994389	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs911979	0.84[EUR][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs4895759	C6orf103	cis	cerebellum	SCAN
rs4895759	EPM2A	cis	cerebellum	SCAN

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:148944200-148946000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr6:148944200-148946800	Weak transcription	Fetal Lung	lung
3	chr6:148944200-148947400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr6:148944400-148950200	Weak transcription	Colon Smooth Muscle	Colon
5	chr6:148945000-148946000	Enhancers	Adipose Nuclei	Adipose
6	chr6:148945000-148946400	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr6:148945200-148945800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr6:148945200-148946000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
9	chr6:148945600-148950200	Weak transcription	NHDF-Ad	bronchial
10	chr6:148945600-148950600	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr6:148945600-148950600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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