Variant report

Variant	rs4896464
Chromosome Location	chr6:139817624-139817625
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:139808542..139810707-chr6:139817260..139819598,2	MCF-7	breast:
2	chr6:139817301..139819044-chr6:139820730..139822475,2	K562	blood:
3	chr6:139732315..139735138-chr6:139816703..139819497,2	K562	blood:
4	chr6:139812402..139815311-chr6:139816711..139818432,2	K562	blood:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10872516	0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11155070	0.80[AMR][1000 genomes]
rs1468708	0.80[AMR][1000 genomes]
rs1468709	0.82[AMR][1000 genomes]
rs2908512	0.93[ASN][1000 genomes]
rs2908513	0.93[ASN][1000 genomes]
rs2908517	0.88[ASN][1000 genomes]
rs3010285	0.84[ASN][1000 genomes]
rs4896461	0.80[AMR][1000 genomes]
rs4896463	0.82[AMR][1000 genomes]
rs6570344	0.80[AMR][1000 genomes]
rs6916887	0.80[AMR][1000 genomes]
rs6923416	0.80[AMR][1000 genomes]
rs6926031	0.80[AMR][1000 genomes]
rs71543295	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7770257	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9376420	0.81[AMR][1000 genomes]
rs9376421	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9376422	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9376423	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9389689	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9399282	0.84[AMR][1000 genomes]
rs9403080	0.82[AMR][1000 genomes]
rs9403081	0.86[EUR][1000 genomes]
rs9403082	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9403083	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9403084	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9495502	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869066	chr6:139777114-140639695	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases
2	nsv1026819	chr6:139813809-139834012	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:139804000-139818200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr6:139815800-139822800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr6:139816800-139818000	Enhancers	K562	blood
4	chr6:139817600-139818400	Enhancers	HepG2	liver
5	chr6:139817600-139820200	Enhancers	Pancreas	Pancrea

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