Variant report

Variant	rs4897611
Chromosome Location	chr6:133034076-133034077
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs2179536	0.96[AFR][1000 genomes];0.80[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs2745432	0.89[ASN][1000 genomes]
rs2745434	0.86[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs2840814	0.86[ASN][1000 genomes]
rs6938367	0.96[AFR][1000 genomes];0.80[AMR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532069	chr6:132776411-133462292	Active TSS Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
2	nsv1015742	chr6:132933666-133285852	Active TSS Flanking Active TSS Enhancers Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	71 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4897611	VNN1	cis	Whole Blood	GTEx

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:133030800-133034400	Weak transcription	Placenta	Placenta
2	chr6:133032200-133034600	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr6:133032400-133034600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr6:133032800-133034800	Active TSS	Duodenum Mucosa	Duodenum
5	chr6:133032800-133035200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
6	chr6:133033000-133034400	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr6:133033000-133034800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr6:133033000-133035200	Active TSS	Liver	Liver
9	chr6:133033200-133035200	Enhancers	Stomach Mucosa	stomach
10	chr6:133033200-133035600	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
11	chr6:133033400-133034200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr6:133033400-133034400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr6:133033400-133035600	Enhancers	Muscle Satellite Cultured Cells	--
14	chr6:133033600-133034800	Enhancers	Primary hematopoietic stem cells short term culture	blood
15	chr6:133033600-133035400	Weak transcription	Fetal Intestine Small	intestine
16	chr6:133033600-133035800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
17	chr6:133033800-133034800	Enhancers	Primary hematopoietic stem cells	blood
18	chr6:133033800-133034800	Weak transcription	HepG2	liver
19	chr6:133033800-133035200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr6:133033800-133035600	Enhancers	Fetal Intestine Large	intestine
21	chr6:133033800-133035600	Enhancers	HSMM	muscle
22	chr6:133033800-133035600	Enhancers	HSMMtube	muscle
23	chr6:133033800-133036600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr6:133034000-133035000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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