Variant report

Variant	rs4899171
Chromosome Location	chr14:65721641-65721642
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:65721103..65724002-chr14:65886062..65888088,2	MCF-7	breast:
2	chr14:65567923..65569908-chr14:65720468..65722497,2	MCF-7	breast:
3	chr14:65720469..65722329-chr14:65885252..65888198,2	MCF-7	breast:
4	chr14:65708389..65714331-chr14:65715596..65724154,17	MCF-7	breast:
5	chr14:65702798..65707565-chr14:65719899..65724349,7	MCF-7	breast:
6	chr14:65720811..65723510-chr20:45874802..45876375,2	MCF-7	breast:
7	chr14:65687724..65702236-chr14:65717995..65729217,67	MCF-7	breast:
8	chr14:65689123..65699940-chr14:65718655..65726829,32	MCF-7	breast:
9	chr14:65720634..65723404-chr14:65821648..65825451,4	MCF-7	breast:
10	chr14:65720143..65726834-chr14:65876571..65883583,24	MCF-7	breast:
11	chr14:65716874..65719656-chr14:65720391..65721945,2	MCF-7	breast:
12	chr14:65718344..65729728-chr14:65875413..65882756,31	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000255002	Chromatin interaction
ENSG00000258878	Chromatin interaction
ENSG00000125952	Chromatin interaction
ENSG00000033170	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1272725	0.82[AMR][1000 genomes]
rs1383595	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2151754	0.97[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2151756	0.82[AMR][1000 genomes]
rs4899169	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4902378	0.82[AMR][1000 genomes]
rs56231407	0.97[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs61987797	0.97[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs61987800	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61987803	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6573597	0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7147344	0.82[AMR][1000 genomes]
rs8016230	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs8022737	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832817	chr14:65637069-65810406	Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
2	nsv832818	chr14:65706859-65882320	Enhancers Strong transcription Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
3	nsv976853	chr14:65708032-65723266	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:62 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65697200-65746800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr14:65711600-65722600	Weak transcription	Primary T cells fromperipheralblood	blood
3	chr14:65713000-65722400	Weak transcription	Primary B cells from peripheral blood	blood
4	chr14:65714000-65735400	Weak transcription	Primary B cells from cord blood	blood
5	chr14:65716200-65721800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr14:65716600-65722000	Weak transcription	Esophagus	oesophagus
7	chr14:65716800-65723600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr14:65717000-65721800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr14:65717200-65721800	Weak transcription	Brain Angular Gyrus	brain
10	chr14:65717200-65721800	Weak transcription	Brain Cingulate Gyrus	brain
11	chr14:65718600-65722000	Weak transcription	NHLF	lung
12	chr14:65718600-65722200	Weak transcription	Spleen	Spleen
13	chr14:65718600-65722400	Weak transcription	Gastric	stomach
14	chr14:65718800-65722200	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr14:65718800-65725200	Enhancers	Placenta	Placenta
16	chr14:65719000-65722000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr14:65719400-65721800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr14:65720000-65722600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
19	chr14:65720200-65721800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
20	chr14:65720400-65725600	Enhancers	Fetal Intestine Large	intestine
21	chr14:65720600-65723200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr14:65720600-65726000	Enhancers	HMEC	breast
23	chr14:65720800-65721800	Enhancers	Fetal Intestine Small	intestine
24	chr14:65720800-65721800	Enhancers	HepG2	liver
25	chr14:65720800-65722000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
26	chr14:65720800-65722000	Weak transcription	Thymus	Thymus
27	chr14:65720800-65722400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
28	chr14:65720800-65722800	Enhancers	Muscle Satellite Cultured Cells	--
29	chr14:65720800-65723600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr14:65721000-65721800	Weak transcription	Brain Anterior Caudate	brain
31	chr14:65721000-65722000	Weak transcription	Brain Hippocampus Middle	brain
32	chr14:65721000-65722400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
33	chr14:65721000-65723200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
34	chr14:65721200-65723200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr14:65721200-65724000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr14:65721400-65721800	Weak transcription	Placenta Amnion	Placenta Amnion
37	chr14:65721400-65722000	Enhancers	HUES64 Cell Line	embryonic stem cell
38	chr14:65721400-65722000	Enhancers	NHEK	skin
39	chr14:65721400-65723200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr14:65721400-65723400	Enhancers	NHDF-Ad	bronchial
41	chr14:65721600-65721800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
42	chr14:65721600-65721800	Enhancers	iPS-20b Cell Line	embryonic stem cell
43	chr14:65721600-65722000	Enhancers	ES-I3 Cell Line	embryonic stem cell
44	chr14:65721600-65722000	Enhancers	iPS-18 Cell Line	embryonic stem cell
45	chr14:65721600-65722200	Enhancers	Lung	lung
46	chr14:65721600-65722200	Flanking Active TSS	A549	lung
47	chr14:65721600-65722400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr14:65721600-65722400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr14:65721600-65722600	Flanking Active TSS	Hela-S3	cervix
50	chr14:65721600-65722600	Enhancers	Osteobl	bone

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