Variant report

Variant	rs4899172
Chromosome Location	chr14:65779904-65779905
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11158588	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12147779	0.92[ASN][1000 genomes]
rs17102601	0.92[ASN][1000 genomes]
rs2127868	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2127870	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4899173	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4902387	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4902388	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4902389	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72712464	0.82[ASN][1000 genomes]
rs72712473	0.92[ASN][1000 genomes]
rs72712485	0.92[ASN][1000 genomes]
rs9635249	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832817	chr14:65637069-65810406	Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
2	nsv832818	chr14:65706859-65882320	Enhancers Strong transcription Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
3	nsv1036403	chr14:65724229-66208114	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65760000-65781000	Weak transcription	Primary B cells from cord blood	blood
2	chr14:65769200-65782400	Weak transcription	Gastric	stomach
3	chr14:65769400-65783600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr14:65771200-65782400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr14:65772400-65787800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
6	chr14:65772800-65781000	Weak transcription	Primary T cells from cord blood	blood
7	chr14:65778600-65780000	Enhancers	Duodenum Mucosa	Duodenum
8	chr14:65779000-65780000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr14:65779400-65780000	Flanking Active TSS	GM12878-XiMat	blood
10	chr14:65779400-65781000	Genic enhancers	Primary B cells from peripheral blood	blood
11	chr14:65779400-65787800	Weak transcription	Fetal Intestine Large	intestine
12	chr14:65779600-65781400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr14:65779800-65780800	Weak transcription	Small Intestine	intestine
14	chr14:65779800-65781000	Weak transcription	Stomach Mucosa	stomach
15	chr14:65779800-65784600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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