Variant report

Variant	rs4899175
Chromosome Location	chr14:65826433-65826434
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:65723281..65726603-chr14:65825964..65828012,3	MCF-7	breast:
2	chr14:65826029..65827973-chr14:65840839..65842424,2	MCF-7	breast:
3	chr14:65820651..65828097-chr14:65876794..65881062,12	MCF-7	breast:
4	chr14:65820274..65829265-chr14:65876318..65881127,26	MCF-7	breast:
5	chr14:65825848..65828815-chr14:65843230..65844945,2	MCF-7	breast:
6	chr14:65694260..65697862-chr14:65826001..65829124,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000033170	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1038239	0.89[EUR][1000 genomes]
rs11846705	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1256537	0.84[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs1256541	0.89[EUR][1000 genomes]
rs1256542	0.89[EUR][1000 genomes]
rs1256544	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17180994	0.97[EUR][1000 genomes]
rs2411915	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs3986780	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7141874	0.82[AMR][1000 genomes]
rs7144530	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs8015222	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs8020305	0.86[AMR][1000 genomes]
rs8021946	0.97[EUR][1000 genomes]
rs8023016	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs899960	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832818	chr14:65706859-65882320	Enhancers Strong transcription Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
2	nsv1036403	chr14:65724229-66208114	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
3	nsv1043943	chr14:65782466-66698411	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
4	nsv542120	chr14:65782466-66698411	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
5	nsv1039168	chr14:65811750-66308343	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65816800-65828000	Enhancers	Primary B cells from peripheral blood	blood
2	chr14:65821600-65831600	Weak transcription	Esophagus	oesophagus
3	chr14:65821800-65828800	Weak transcription	Psoas Muscle	Psoas
4	chr14:65822600-65834200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr14:65823400-65828600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr14:65823600-65826800	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr14:65823600-65828800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr14:65823600-65829000	Weak transcription	HSMM	muscle
9	chr14:65823800-65826600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr14:65823800-65828600	Weak transcription	Osteobl	bone
11	chr14:65824200-65827200	Weak transcription	Fetal Intestine Large	intestine
12	chr14:65824200-65828200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr14:65824200-65828800	Weak transcription	NH-A	brain
14	chr14:65824400-65826600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr14:65824400-65827000	Weak transcription	Primary B cells from cord blood	blood
16	chr14:65824400-65827200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr14:65824400-65827200	Weak transcription	Brain Angular Gyrus	brain
18	chr14:65824400-65829000	Weak transcription	Placenta	Placenta
19	chr14:65824400-65839800	Weak transcription	Primary T cells from cord blood	blood
20	chr14:65824600-65828600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr14:65824600-65828600	Weak transcription	NHDF-Ad	bronchial
22	chr14:65824600-65829000	Weak transcription	Hela-S3	cervix
23	chr14:65824600-65833200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
24	chr14:65824600-65839800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr14:65824800-65826800	Weak transcription	Rectal Smooth Muscle	rectum
26	chr14:65824800-65828600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
27	chr14:65824800-65828800	Weak transcription	Fetal Lung	lung
28	chr14:65824800-65836200	Weak transcription	Brain Cingulate Gyrus	brain
29	chr14:65825000-65828200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr14:65825400-65827200	Weak transcription	Right Ventricle	heart
31	chr14:65826000-65826600	Enhancers	Small Intestine	intestine
32	chr14:65826000-65827400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr14:65826000-65827400	Enhancers	Brain Inferior Temporal Lobe	brain
34	chr14:65826000-65827400	Enhancers	Skeletal Muscle Male	skeletal muscle
35	chr14:65826000-65827400	Enhancers	HMEC	breast
36	chr14:65826000-65827400	Enhancers	NHEK	skin
37	chr14:65826000-65827600	Enhancers	Stomach Mucosa	stomach
38	chr14:65826000-65827800	Enhancers	GM12878-XiMat	blood
39	chr14:65826200-65826600	Enhancers	Primary monocytes fromperipheralblood	blood
40	chr14:65826200-65826600	Enhancers	Brain Anterior Caudate	brain
41	chr14:65826200-65827000	Enhancers	Primary hematopoietic stem cells short term culture	blood
42	chr14:65826200-65827200	Enhancers	Brain Hippocampus Middle	brain
43	chr14:65826400-65827400	Enhancers	Colon Smooth Muscle	Colon
44	chr14:65826400-65827400	Enhancers	Skeletal Muscle Female	skeletal muscle
45	chr14:65826400-65827600	Enhancers	HSMMtube	muscle
46	chr14:65826400-65840000	Weak transcription	Brain Substantia Nigra	brain

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