Variant report

Variant	rs4899304
Chromosome Location	chr14:70048032-70048033
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:70046589..70048780-chr14:70243227..70244805,2	MCF-7	breast:
2	chr14:70047354..70049945-chr14:70191863..70193744,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000100650	Chromatin interaction

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10145804	0.86[EUR][1000 genomes]
rs1275742	0.93[JPT][hapmap]
rs1743379	0.81[JPT][hapmap]
rs17764280	1.00[CHB][hapmap]
rs2025132	0.80[EUR][1000 genomes]
rs2025133	0.87[EUR][1000 genomes]
rs4899301	0.87[CEU][hapmap];0.83[TSI][hapmap];0.84[EUR][1000 genomes]
rs4899303	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4899305	0.93[CEU][hapmap];0.81[CHB][hapmap];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4902728	0.85[ASN][1000 genomes]
rs4902734	0.84[EUR][1000 genomes]
rs4902738	0.87[CEU][hapmap];0.80[EUR][1000 genomes]
rs4902739	0.83[EUR][1000 genomes]
rs55727771	0.83[ASN][1000 genomes]
rs55817110	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs55923041	0.97[ASN][1000 genomes]
rs56249045	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56791796	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs57769796	0.86[ASN][1000 genomes]
rs61980683	0.85[ASN][1000 genomes]
rs61980684	0.95[ASN][1000 genomes]
rs61980693	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61980724	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61982438	0.82[ASN][1000 genomes]
rs61982440	0.82[ASN][1000 genomes]
rs6573892	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6573893	0.87[CEU][hapmap];0.87[TSI][hapmap];0.84[EUR][1000 genomes]
rs6573894	0.87[CEU][hapmap];0.87[TSI][hapmap];0.84[EUR][1000 genomes]
rs7140978	0.80[CEU][hapmap];0.83[TSI][hapmap];0.83[EUR][1000 genomes]
rs7141009	0.86[ASN][1000 genomes]
rs7143960	0.93[JPT][hapmap]
rs7147881	0.81[CEU][hapmap];0.83[TSI][hapmap];0.83[EUR][1000 genomes]
rs7494244	0.87[CEU][hapmap];0.84[EUR][1000 genomes]
rs873176	0.88[ASN][1000 genomes]
rs927387	0.93[CEU][hapmap];0.81[CHB][hapmap];0.90[EUR][1000 genomes]
rs945308	0.81[JPT][hapmap]
rs9788506	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1335	chr14:70036126-70062584	Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1049280	chr14:70036804-70172630	Weak transcription Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv542124	chr14:70036804-70172630	Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:70041600-70060400	Weak transcription	Esophagus	oesophagus
2	chr14:70043800-70067200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr14:70045800-70052600	Weak transcription	Right Atrium	heart
4	chr14:70046800-70048800	Weak transcription	NH-A	brain
5	chr14:70046800-70051600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr14:70047000-70048400	Weak transcription	Left Ventricle	heart
7	chr14:70047200-70048200	Weak transcription	Adipose Nuclei	Adipose
8	chr14:70047200-70048200	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr14:70047400-70048200	Weak transcription	K562	blood
10	chr14:70047400-70048400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr14:70047400-70048400	Weak transcription	Pancreas	Pancrea
12	chr14:70047400-70048800	Weak transcription	Osteobl	bone
13	chr14:70047400-70052000	Weak transcription	Lung	lung
14	chr14:70047400-70052400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
15	chr14:70047400-70053000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr14:70047400-70053600	Weak transcription	Stomach Mucosa	stomach
17	chr14:70047600-70048200	Weak transcription	Hela-S3	cervix
18	chr14:70047800-70048200	Enhancers	Primary monocytes fromperipheralblood	blood
19	chr14:70047800-70048200	Enhancers	Primary B cells from peripheral blood	blood
20	chr14:70048000-70048200	Enhancers	Primary B cells from cord blood	blood
21	chr14:70048000-70048200	Enhancers	Primary mononuclear cells fromperipheralblood	Blood

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