Variant report

Variant	rs4899412
Chromosome Location	chr14:72464262-72464263
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs1009017	0.91[CEU][hapmap];0.93[CHB][hapmap];1.00[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11158920	0.86[CHB][hapmap];0.94[JPT][hapmap]
rs11158921	0.93[CHB][hapmap]
rs11158926	0.94[JPT][hapmap];0.83[ASN][1000 genomes]
rs11158927	0.93[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.98[ASN][1000 genomes]
rs11620690	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs11622507	0.93[ASN][1000 genomes]
rs11623492	1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs11623535	0.94[ASW][hapmap];0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11625937	1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs11627768	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs11628133	0.86[CHB][hapmap];0.89[CHD][hapmap];0.94[JPT][hapmap];0.90[ASN][1000 genomes]
rs11628574	0.89[JPT][hapmap]
rs12148043	0.93[CHB][hapmap];0.93[CHD][hapmap];0.94[JPT][hapmap];0.90[ASN][1000 genomes]
rs12433721	0.86[CHB][hapmap];0.94[JPT][hapmap]
rs12586947	0.83[CEU][hapmap]
rs12586968	0.83[CEU][hapmap]
rs12883063	0.95[CEU][hapmap];0.88[EUR][1000 genomes]
rs12885938	0.87[CEU][hapmap]
rs12897386	0.91[CEU][hapmap];0.90[EUR][1000 genomes]
rs1476745	0.94[JPT][hapmap];0.83[ASN][1000 genomes]
rs17093750	0.88[JPT][hapmap]
rs17105346	1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs17105566	1.00[CHB][hapmap];0.94[JPT][hapmap];0.99[ASN][1000 genomes]
rs17105606	0.93[CHB][hapmap];0.94[JPT][hapmap];0.91[ASN][1000 genomes]
rs17105690	0.92[CHB][hapmap];0.94[JPT][hapmap]
rs17768361	0.94[JPT][hapmap];0.83[ASN][1000 genomes]
rs1987722	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1987723	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2010846	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2010850	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2052015	0.89[JPT][hapmap]
rs2067856	0.93[CHB][hapmap];0.89[CHD][hapmap]
rs2159457	0.85[CHB][hapmap]
rs2190864	0.88[JPT][hapmap]
rs2215132	0.82[CEU][hapmap]
rs2238277	0.93[CHB][hapmap];0.89[CHD][hapmap];0.85[JPT][hapmap];0.83[MEX][hapmap]
rs2238280	0.86[CEU][hapmap];0.93[CHB][hapmap];0.89[CHD][hapmap];0.89[MEX][hapmap];0.82[EUR][1000 genomes]
rs2239268	0.87[CEU][hapmap]
rs2332705	0.92[ASN][1000 genomes]
rs2332707	0.90[EUR][1000 genomes]
rs35727014	0.88[EUR][1000 genomes]
rs3784055	1.00[CHB][hapmap];0.89[CHD][hapmap];0.81[GIH][hapmap];0.94[JPT][hapmap];0.80[ASN][1000 genomes]
rs3784056	1.00[CHB][hapmap];0.89[CHD][hapmap];0.81[GIH][hapmap];0.94[JPT][hapmap];0.81[ASN][1000 genomes]
rs3784058	0.86[CHB][hapmap];0.94[JPT][hapmap]
rs4048388	0.91[CEU][hapmap];0.86[EUR][1000 genomes]
rs4243640	0.94[ASW][hapmap];0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];0.94[MEX][hapmap];0.90[MKK][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4350510	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4354860	0.94[ASW][hapmap];0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4899409	0.93[CHB][hapmap];0.89[CHD][hapmap]
rs4902958	0.93[CHB][hapmap];0.94[JPT][hapmap]
rs4902966	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58890880	0.92[ASN][1000 genomes]
rs59631889	0.92[ASN][1000 genomes]
rs60503142	0.93[ASN][1000 genomes]
rs6574037	0.91[CEU][hapmap];0.86[EUR][1000 genomes]
rs699358	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72735952	0.90[ASN][1000 genomes]
rs72735955	0.97[ASN][1000 genomes]
rs72735956	0.97[ASN][1000 genomes]
rs728497	0.93[CHB][hapmap];0.89[CHD][hapmap];0.83[MEX][hapmap]
rs7494103	0.89[JPT][hapmap]
rs8008678	0.91[CEU][hapmap];0.88[EUR][1000 genomes]
rs8013467	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530794	chr14:72113818-73034008	Enhancers Bivalent/Poised TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
2	nsv948800	chr14:72462557-73150701	Enhancers Bivalent Enhancer Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:72462600-72465200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr14:72462800-72467200	Weak transcription	Right Ventricle	heart
3	chr14:72463400-72465200	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr14:72464000-72467200	Weak transcription	Left Ventricle	heart

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