Variant report

Variant	rs4901604
Chromosome Location	chr14:56295336-56295337
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10459511	0.93[GIH][hapmap];0.90[TSI][hapmap];0.96[EUR][1000 genomes]
rs11158055	0.92[EUR][1000 genomes]
rs12587196	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17128844	0.83[AFR][1000 genomes]
rs17128877	0.83[AFR][1000 genomes]
rs4901608	0.80[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs66706427	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs67462753	0.80[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs68158881	0.94[EUR][1000 genomes]
rs72622474	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv901966	chr14:56160904-56436203	Weak transcription Bivalent Enhancer Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv901977	chr14:56213392-56492996	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:56290800-56295400	Weak transcription	Pancreas	Pancrea
2	chr14:56294000-56301800	Enhancers	Stomach Mucosa	stomach
3	chr14:56295000-56295600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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