Variant report

Variant	rs4902395
Chromosome Location	chr14:65927084-65927085
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:65913368..65916336-chr14:65927007..65928955,2	K562	blood:
2	chr14:65925362..65927679-chr14:65938765..65941541,2	K562	blood:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs1256507	0.82[YRI][hapmap]
rs2095510	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs2411358	0.87[AFR][1000 genomes]
rs4902401	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4902403	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7145706	1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs7147856	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1036403	chr14:65724229-66208114	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv1043943	chr14:65782466-66698411	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
3	nsv542120	chr14:65782466-66698411	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
4	nsv1039168	chr14:65811750-66308343	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
5	esv3366524	chr14:65924360-66423862	Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:84 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65892800-65929600	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr14:65898400-65935600	Weak transcription	Gastric	stomach
3	chr14:65899600-65929000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr14:65902400-65928400	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr14:65905800-65936600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr14:65911200-65942400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
7	chr14:65913200-65928000	Weak transcription	Osteobl	bone
8	chr14:65913800-65928000	Weak transcription	HUVEC	blood vessel
9	chr14:65913800-65942400	Weak transcription	Left Ventricle	heart
10	chr14:65915600-65928200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr14:65917200-65936600	Weak transcription	Pancreas	Pancrea
12	chr14:65918400-65928000	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr14:65918400-65928200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
14	chr14:65918600-65928000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr14:65918600-65935600	Weak transcription	Fetal Stomach	stomach
16	chr14:65918800-65928400	Weak transcription	Fetal Thymus	thymus
17	chr14:65920000-65928200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr14:65920400-65937800	Weak transcription	Ovary	ovary
19	chr14:65920800-65927600	Weak transcription	Brain Cingulate Gyrus	brain
20	chr14:65920800-65927600	Weak transcription	Small Intestine	intestine
21	chr14:65920800-65928000	Weak transcription	Brain Angular Gyrus	brain
22	chr14:65920800-65929000	Weak transcription	K562	blood
23	chr14:65920800-65942400	Weak transcription	Stomach Mucosa	stomach
24	chr14:65921000-65928000	Weak transcription	Colon Smooth Muscle	Colon
25	chr14:65921600-65928000	Weak transcription	Brain Anterior Caudate	brain
26	chr14:65921800-65928000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
27	chr14:65922200-65936400	Weak transcription	Placenta	Placenta
28	chr14:65922600-65927600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
29	chr14:65922600-65928000	Strong transcription	Primary B cells from cord blood	blood
30	chr14:65922800-65928200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr14:65922800-65928200	Strong transcription	Primary T cells fromperipheralblood	blood
32	chr14:65922800-65928600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr14:65923200-65927800	Strong transcription	Primary B cells from peripheral blood	blood
34	chr14:65923200-65928200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr14:65923200-65934800	Weak transcription	HUES6 Cell Line	embryonic stem cell
36	chr14:65923200-65936000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
37	chr14:65923200-65938200	Weak transcription	Cortex derived primary cultured neurospheres	brain
38	chr14:65923400-65927800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
39	chr14:65923400-65928000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
40	chr14:65923400-65928200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
41	chr14:65923400-65935800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
42	chr14:65923400-65937000	Weak transcription	Brain Germinal Matrix	brain
43	chr14:65923400-65938000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
44	chr14:65923400-65945000	Weak transcription	NHDF-Ad	bronchial
45	chr14:65923600-65927800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
46	chr14:65923600-65928400	Weak transcription	Adipose Nuclei	Adipose
47	chr14:65924000-65927800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
48	chr14:65924000-65937600	Weak transcription	Fetal Brain Female	brain
49	chr14:65924200-65927600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
50	chr14:65924200-65936600	Weak transcription	Lung	lung

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