Variant report

Variant	rs4902740
Chromosome Location	chr14:70072239-70072240
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:70070411..70072441-chr14:70102031..70104463,2	MCF-7	breast:
2	chr14:70071432..70073143-chr14:70076728..70078696,2	K562	blood:
3	chr14:70071959..70073623-chr14:70086065..70088402,2	K562	blood:

Variant related genes	Relation type
ENSG00000100647	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10151991	0.81[AFR][1000 genomes]
rs11158811	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs11624394	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs1275741	0.88[AFR][1000 genomes]
rs1275743	0.88[AFR][1000 genomes]
rs1275818	0.82[AFR][1000 genomes]
rs1275819	0.82[AFR][1000 genomes]
rs1275820	0.82[AFR][1000 genomes]
rs1275821	0.82[AFR][1000 genomes]
rs1957366	1.00[YRI][hapmap];0.82[AFR][1000 genomes]
rs2181051	1.00[YRI][hapmap];0.88[AFR][1000 genomes]
rs2208653	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs4899307	0.94[AFR][1000 genomes]
rs4902729	0.81[AFR][1000 genomes]
rs4902731	0.81[AFR][1000 genomes]
rs4902732	1.00[YRI][hapmap]
rs6573891	0.81[AFR][1000 genomes]
rs762050	0.81[AFR][1000 genomes]
rs8018613	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049280	chr14:70036804-70172630	Weak transcription Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv542124	chr14:70036804-70172630	Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:70060400-70076600	Weak transcription	Brain Angular Gyrus	brain
2	chr14:70060800-70076800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr14:70067200-70077000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr14:70067400-70077000	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr14:70067600-70076600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr14:70069000-70076800	Weak transcription	Right Atrium	heart
7	chr14:70070400-70076800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr14:70070600-70076800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
9	chr14:70070800-70072400	Weak transcription	Stomach Mucosa	stomach
10	chr14:70070800-70076800	Weak transcription	Fetal Muscle Trunk	muscle
11	chr14:70071200-70073000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr14:70071200-70073000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr14:70071200-70073200	Weak transcription	H1 Cell Line	embryonic stem cell
14	chr14:70071400-70072400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr14:70071400-70072400	Weak transcription	GM12878-XiMat	blood
16	chr14:70071400-70072800	Weak transcription	HUES6 Cell Line	embryonic stem cell
17	chr14:70071400-70076800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
18	chr14:70071600-70077000	Weak transcription	Brain Anterior Caudate	brain
19	chr14:70071800-70072800	Enhancers	HepG2	liver
20	chr14:70071800-70074400	Enhancers	Fetal Intestine Large	intestine
21	chr14:70071800-70074400	Enhancers	Rectal Mucosa Donor 31	rectum
22	chr14:70072000-70075000	Enhancers	Liver	Liver
23	chr14:70072200-70073200	Enhancers	Rectal Mucosa Donor 29	rectum
24	chr14:70072200-70073600	Enhancers	Sigmoid Colon	Sigmoid Colon
25	chr14:70072200-70074200	Enhancers	Hela-S3	cervix
26	chr14:70072200-70074400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr14:70072200-70074400	Enhancers	Colonic Mucosa	Colon
28	chr14:70072200-70074400	Enhancers	Fetal Intestine Small	intestine

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