Variant report

Variant	rs4902778
Chromosome Location	chr14:70580236-70580237
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1035716	0.95[CHB][hapmap];0.91[JPT][hapmap];0.94[ASN][1000 genomes]
rs12590688	0.95[CHB][hapmap];0.87[JPT][hapmap];0.86[ASN][1000 genomes]
rs35460978	0.86[ASN][1000 genomes]
rs3861684	0.91[CHB][hapmap];0.91[JPT][hapmap];0.83[ASN][1000 genomes]
rs4899331	0.82[CHB][hapmap];0.82[JPT][hapmap];0.83[ASN][1000 genomes]
rs4902780	0.87[CHB][hapmap];0.83[CHD][hapmap]
rs4902784	0.83[ASN][1000 genomes]
rs7142757	0.95[CHB][hapmap];0.91[CHD][hapmap];0.86[JPT][hapmap]
rs7156495	1.00[CHB][hapmap];0.98[CHD][hapmap];0.91[JPT][hapmap];0.92[ASN][1000 genomes]
rs8006818	1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[JPT][hapmap];0.96[ASN][1000 genomes]
rs8019271	0.82[CHB][hapmap];0.83[CHD][hapmap]
rs8020582	0.95[CHB][hapmap];0.91[JPT][hapmap];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832826	chr14:70559589-70723464	Bivalent/Poised TSS Bivalent Enhancer Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:70567600-70580800	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr14:70567800-70582200	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr14:70575600-70586600	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr14:70575600-70586800	Weak transcription	HSMMtube	muscle
5	chr14:70579600-70580800	Weak transcription	Placenta	Placenta
6	chr14:70579800-70599400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr14:70580200-70583200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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