Variant report

Variant	rs4902779
Chromosome Location	chr14:70583312-70583313
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:70581826..70584664-chr14:70596799..70599153,2	MCF-7	breast:

Extended variants
information (count: 96 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:95)

rs_ID	r²[population]
rs10444731	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs10444732	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs10444733	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs10483824	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs11158837	0.94[EUR][1000 genomes]
rs11158839	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs11158840	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs1122706	0.82[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs1122707	0.94[EUR][1000 genomes]
rs1122708	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs11850592	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs12147147	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs12147341	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs12147621	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs12147634	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs12437377	0.86[JPT][hapmap];0.81[ASN][1000 genomes]
rs12587012	0.91[JPT][hapmap];0.81[ASN][1000 genomes]
rs17107798	0.94[EUR][1000 genomes]
rs17107826	0.91[JPT][hapmap]
rs17107875	0.91[JPT][hapmap]
rs17107893	0.93[EUR][1000 genomes]
rs17107916	0.82[JPT][hapmap];1.00[YRI][hapmap]
rs17107920	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs17107925	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs17175527	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs17175597	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs17175695	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs17175848	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs17175939	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs17175960	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs17765251	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs17765304	0.93[CEU][hapmap];0.94[EUR][1000 genomes]
rs17765370	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs17765449	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs17765575	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs17765586	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs2605	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs2840250	0.86[JPT][hapmap]
rs4902780	0.86[CHB][hapmap];0.91[JPT][hapmap];0.89[ASN][1000 genomes]
rs4902781	0.82[CHB][hapmap];0.90[JPT][hapmap];0.87[ASN][1000 genomes]
rs4902782	0.91[JPT][hapmap];0.81[ASN][1000 genomes]
rs56251207	0.94[EUR][1000 genomes]
rs56266899	0.94[EUR][1000 genomes]
rs56374433	0.94[EUR][1000 genomes]
rs56935411	0.92[EUR][1000 genomes]
rs60552299	0.85[EUR][1000 genomes]
rs61977430	0.92[EUR][1000 genomes]
rs61977438	0.94[EUR][1000 genomes]
rs61977439	0.94[EUR][1000 genomes]
rs61977440	0.94[EUR][1000 genomes]
rs61977443	0.92[EUR][1000 genomes]
rs61977444	0.92[EUR][1000 genomes]
rs61977445	0.94[EUR][1000 genomes]
rs61977446	0.94[EUR][1000 genomes]
rs61977448	0.94[EUR][1000 genomes]
rs61977449	0.94[EUR][1000 genomes]
rs61977450	0.93[EUR][1000 genomes]
rs61977451	0.94[EUR][1000 genomes]
rs61977453	0.94[EUR][1000 genomes]
rs61977454	0.94[EUR][1000 genomes]
rs61977455	0.94[EUR][1000 genomes]
rs61977456	0.94[EUR][1000 genomes]
rs61977457	0.94[EUR][1000 genomes]
rs61978160	0.94[EUR][1000 genomes]
rs61978162	0.94[EUR][1000 genomes]
rs61978164	0.94[EUR][1000 genomes]
rs61978165	0.94[EUR][1000 genomes]
rs61978175	0.93[EUR][1000 genomes]
rs61978178	0.93[EUR][1000 genomes]
rs61978184	0.87[EUR][1000 genomes]
rs61978185	0.87[EUR][1000 genomes]
rs61978186	0.93[EUR][1000 genomes]
rs61978187	0.93[EUR][1000 genomes]
rs61978188	0.93[EUR][1000 genomes]
rs61978189	0.93[EUR][1000 genomes]
rs7140688	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs7143465	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs7144377	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs7148926	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs7149304	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs7157278	0.83[ASN][1000 genomes]
rs7158149	0.93[EUR][1000 genomes]
rs7158867	0.94[EUR][1000 genomes]
rs7158942	0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs7159555	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs8006988	0.87[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs8007664	0.90[JPT][hapmap]
rs8011864	0.94[EUR][1000 genomes]
rs8015011	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs8015205	0.94[EUR][1000 genomes]
rs8018678	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs8019271	0.82[CHB][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs8020693	0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs8022074	0.90[JPT][hapmap];0.90[YRI][hapmap];0.81[ASN][1000 genomes]
rs998306	1.00[CEU][hapmap];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832826	chr14:70559589-70723464	Bivalent/Poised TSS Bivalent Enhancer Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:70575600-70586600	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr14:70575600-70586800	Weak transcription	HSMMtube	muscle
3	chr14:70579800-70599400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr14:70580800-70587000	Enhancers	Skeletal Muscle Male	skeletal muscle
5	chr14:70581600-70586800	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr14:70582200-70587200	Enhancers	Skeletal Muscle Female	skeletal muscle
7	chr14:70582600-70583400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr14:70582600-70583400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr14:70582800-70584000	Enhancers	Fetal Brain Male	brain
10	chr14:70582800-70586400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr14:70583000-70583400	Enhancers	HUES48 Cell Line	embryonic stem cell
12	chr14:70583000-70583400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr14:70583000-70583400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr14:70583000-70585600	Weak transcription	Psoas Muscle	Psoas
15	chr14:70583200-70583600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr14:70583200-70584000	Enhancers	Fetal Brain Female	brain

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