Variant report

Variant	rs4902960
Chromosome Location	chr14:72432149-72432150
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10147777	0.88[EUR][1000 genomes]
rs10150071	0.84[ASN][1000 genomes]
rs10483838	1.00[CEU][hapmap];0.81[JPT][hapmap];0.85[MEX][hapmap]
rs11846754	0.83[EUR][1000 genomes]
rs11850532	0.88[EUR][1000 genomes]
rs12884777	0.94[JPT][hapmap];0.82[ASN][1000 genomes]
rs17104975	0.93[JPT][hapmap];0.81[ASN][1000 genomes]
rs17104979	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17105025	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap]
rs17105032	0.86[ASW][hapmap];1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.88[LWK][hapmap];1.00[MEX][hapmap];0.87[TSI][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17105061	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.87[TSI][hapmap];0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1860105	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs1989628	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2190872	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs2238274	1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs2238275	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.95[ASN][1000 genomes]
rs2238276	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.95[ASN][1000 genomes]
rs2238278	0.92[ASN][1000 genomes]
rs2238283	1.00[CEU][hapmap];0.82[CHB][hapmap];0.91[JPT][hapmap];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2238285	1.00[CEU][hapmap];0.91[CHB][hapmap];0.82[CHD][hapmap];0.87[JPT][hapmap];0.86[MEX][hapmap];1.00[TSI][hapmap];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2239266	0.81[JPT][hapmap]
rs2239270	1.00[CEU][hapmap];0.80[JPT][hapmap];0.83[EUR][1000 genomes]
rs2283422	0.94[JPT][hapmap];0.82[ASN][1000 genomes]
rs23219	0.82[CHB][hapmap];0.82[CHD][hapmap];0.87[JPT][hapmap]
rs2332701	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3784054	0.81[JPT][hapmap]
rs41389946	0.81[JPT][hapmap]
rs41488847	0.81[JPT][hapmap]
rs4902961	0.94[JPT][hapmap];0.85[ASN][1000 genomes]
rs4902965	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs56661004	0.82[ASN][1000 genomes]
rs56731686	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs58002698	0.95[ASN][1000 genomes]
rs59307289	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs60545259	0.95[ASN][1000 genomes]
rs7143919	0.94[JPT][hapmap];0.84[ASN][1000 genomes]
rs7156200	0.94[JPT][hapmap];0.82[ASN][1000 genomes]
rs720391	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73293246	0.82[ASN][1000 genomes]
rs74060440	0.82[ASN][1000 genomes]
rs764624	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530794	chr14:72113818-73034008	Enhancers Bivalent/Poised TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases

Variant related diseases (count:1)

Disease	PMID	Source
Economic and political preferences (environmentalism)	22566634	GWAS catalog

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:72426800-72437200	Weak transcription	Left Ventricle	heart
2	chr14:72430400-72435800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr14:72430800-72432400	Strong transcription	Cortex derived primary cultured neurospheres	brain
4	chr14:72431200-72435400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr14:72431800-72434000	Enhancers	GM12878-XiMat	blood

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