Variant report

Variant	rs4902967
Chromosome Location	chr14:72469761-72469762
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:72468951..72470945-chr14:72473114..72474877,2	MCF-7	breast:

Extended variants
information (count: 79 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:77)

rs_ID	r²[population]
rs1009018	1.00[CEU][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.95[TSI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10873248	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11158929	1.00[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs11850239	1.00[JPT][hapmap]
rs1978226	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2108709	1.00[JPT][hapmap]
rs2109268	0.86[CEU][hapmap];0.86[TSI][hapmap]
rs2190868	1.00[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs2190871	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2190874	0.93[CEU][hapmap];1.00[MKK][hapmap];0.95[TSI][hapmap];0.87[EUR][1000 genomes]
rs2215133	0.87[EUR][1000 genomes]
rs2332706	0.81[CEU][hapmap]
rs2877772	0.84[EUR][1000 genomes]
rs2877773	0.87[EUR][1000 genomes]
rs2877776	0.90[ASN][1000 genomes]
rs36319	0.93[CEU][hapmap];0.87[EUR][1000 genomes]
rs36320	0.87[EUR][1000 genomes]
rs36322	0.87[EUR][1000 genomes]
rs36323	0.87[EUR][1000 genomes]
rs36324	0.85[CEU][hapmap];0.87[EUR][1000 genomes]
rs36325	0.87[EUR][1000 genomes]
rs36328	0.87[EUR][1000 genomes]
rs36329	0.84[EUR][1000 genomes]
rs36330	0.87[EUR][1000 genomes]
rs36331	0.95[TSI][hapmap];0.84[EUR][1000 genomes]
rs36333	0.87[EUR][1000 genomes]
rs36334	0.87[EUR][1000 genomes]
rs36337	0.87[EUR][1000 genomes]
rs36338	0.84[EUR][1000 genomes]
rs36339	0.87[EUR][1000 genomes]
rs36342	0.85[EUR][1000 genomes]
rs36343	0.85[EUR][1000 genomes]
rs36346	0.85[EUR][1000 genomes]
rs36347	0.85[EUR][1000 genomes]
rs36348	0.85[EUR][1000 genomes]
rs36349	0.85[EUR][1000 genomes]
rs36352	0.85[EUR][1000 genomes]
rs36353	0.85[EUR][1000 genomes]
rs36354	0.85[EUR][1000 genomes]
rs36355	0.85[EUR][1000 genomes]
rs36357	0.85[EUR][1000 genomes]
rs36358	0.82[EUR][1000 genomes]
rs36359	0.85[EUR][1000 genomes]
rs36362	0.85[EUR][1000 genomes]
rs36746	1.00[JPT][hapmap]
rs4243639	0.84[CEU][hapmap];0.87[EUR][1000 genomes]
rs4598834	0.93[CEU][hapmap];0.95[TSI][hapmap];0.94[EUR][1000 genomes]
rs4899406	0.93[CEU][hapmap];1.00[MKK][hapmap];0.95[TSI][hapmap];0.87[EUR][1000 genomes]
rs4899408	0.93[CEU][hapmap];0.87[EUR][1000 genomes]
rs4899414	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs4899415	1.00[JPT][hapmap]
rs4899420	1.00[JPT][hapmap]
rs4902959	0.93[CEU][hapmap];0.87[EUR][1000 genomes]
rs4902962	0.93[CEU][hapmap];0.87[EUR][1000 genomes]
rs4902968	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4902969	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[TSI][hapmap];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4902970	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4902972	0.93[CEU][hapmap];0.90[TSI][hapmap];0.83[EUR][1000 genomes]
rs4902973	1.00[JPT][hapmap]
rs4902975	1.00[JPT][hapmap]
rs61996396	0.87[EUR][1000 genomes]
rs6574036	0.86[CEU][hapmap];0.84[EUR][1000 genomes]
rs7161413	1.00[CEU][hapmap];0.95[TSI][hapmap];0.91[EUR][1000 genomes]
rs722975	0.93[CEU][hapmap];0.87[EUR][1000 genomes]
rs728494	0.92[CEU][hapmap];1.00[MKK][hapmap];0.90[TSI][hapmap];0.87[EUR][1000 genomes]
rs728495	0.86[CEU][hapmap];0.90[TSI][hapmap];0.84[EUR][1000 genomes]
rs728498	0.93[CEU][hapmap];0.87[EUR][1000 genomes]
rs757598	1.00[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs758235	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[MKK][hapmap];1.00[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs758236	0.86[CEU][hapmap];0.95[TSI][hapmap];0.84[EUR][1000 genomes]
rs8003097	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs8004427	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.95[TSI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8011972	0.93[CEU][hapmap];0.95[TSI][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs8014500	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs8017353	1.00[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs917392	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs991890	0.93[CEU][hapmap];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530794	chr14:72113818-73034008	Enhancers Bivalent/Poised TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
2	nsv948800	chr14:72462557-73150701	Enhancers Bivalent Enhancer Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:72467000-72471000	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr14:72468000-72470200	Enhancers	Fetal Brain Male	brain
3	chr14:72468000-72470400	Weak transcription	Fetal Muscle Leg	muscle
4	chr14:72468000-72470400	Weak transcription	Left Ventricle	heart
5	chr14:72469000-72470000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr14:72469000-72470200	Enhancers	Fetal Brain Female	brain

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