Variant report

Variant	rs4902969
Chromosome Location	chr14:72470260-72470261
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:72468951..72470945-chr14:72473114..72474877,2	MCF-7	breast:

Extended variants
information (count: 79 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:77)

rs_ID	r²[population]
rs1009018	0.93[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10873248	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11158929	0.90[ASN][1000 genomes]
rs11850239	1.00[JPT][hapmap]
rs1978226	0.88[CEU][hapmap];0.94[EUR][1000 genomes]
rs2108709	1.00[JPT][hapmap]
rs2109268	0.93[CEU][hapmap];0.82[TSI][hapmap]
rs2190868	0.90[ASN][1000 genomes]
rs2190871	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2190872	0.80[CEU][hapmap]
rs2190874	0.86[CEU][hapmap];0.95[TSI][hapmap];0.84[EUR][1000 genomes]
rs2215133	0.84[EUR][1000 genomes]
rs2332706	0.87[CEU][hapmap]
rs2877772	0.87[EUR][1000 genomes]
rs2877773	0.84[EUR][1000 genomes]
rs2877776	0.90[ASN][1000 genomes]
rs36319	0.86[CEU][hapmap];0.84[EUR][1000 genomes]
rs36320	0.84[EUR][1000 genomes]
rs36322	0.84[EUR][1000 genomes]
rs36323	0.84[EUR][1000 genomes]
rs36324	0.84[EUR][1000 genomes]
rs36325	0.84[EUR][1000 genomes]
rs36328	0.84[EUR][1000 genomes]
rs36329	0.87[EUR][1000 genomes]
rs36330	0.84[EUR][1000 genomes]
rs36331	0.86[CEU][hapmap];0.95[TSI][hapmap];0.87[EUR][1000 genomes]
rs36333	0.84[EUR][1000 genomes]
rs36334	0.84[EUR][1000 genomes]
rs36337	0.84[EUR][1000 genomes]
rs36338	0.87[EUR][1000 genomes]
rs36339	0.84[EUR][1000 genomes]
rs36342	0.83[EUR][1000 genomes]
rs36343	0.83[EUR][1000 genomes]
rs36346	0.83[EUR][1000 genomes]
rs36347	0.83[EUR][1000 genomes]
rs36348	0.83[EUR][1000 genomes]
rs36349	0.83[EUR][1000 genomes]
rs36352	0.83[EUR][1000 genomes]
rs36353	0.83[EUR][1000 genomes]
rs36354	0.83[EUR][1000 genomes]
rs36355	0.83[EUR][1000 genomes]
rs36357	0.83[EUR][1000 genomes]
rs36359	0.83[EUR][1000 genomes]
rs36362	0.83[EUR][1000 genomes]
rs36746	1.00[JPT][hapmap]
rs4243639	0.84[EUR][1000 genomes]
rs4598834	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.97[EUR][1000 genomes]
rs4899406	0.86[CEU][hapmap];0.95[TSI][hapmap];0.84[EUR][1000 genomes]
rs4899408	0.86[CEU][hapmap];0.84[EUR][1000 genomes]
rs4899414	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs4899415	1.00[JPT][hapmap]
rs4899420	1.00[JPT][hapmap]
rs4902959	0.86[CEU][hapmap];0.84[EUR][1000 genomes]
rs4902962	0.86[CEU][hapmap];0.84[EUR][1000 genomes]
rs4902967	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[TSI][hapmap];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4902968	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4902970	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4902972	1.00[CEU][hapmap];0.95[TSI][hapmap];0.86[EUR][1000 genomes]
rs4902973	1.00[JPT][hapmap]
rs4902975	1.00[JPT][hapmap]
rs61996396	0.84[EUR][1000 genomes]
rs6574036	0.93[CEU][hapmap];0.87[EUR][1000 genomes]
rs7161413	0.93[CEU][hapmap];1.00[TSI][hapmap];0.89[EUR][1000 genomes]
rs722975	0.86[CEU][hapmap];0.84[EUR][1000 genomes]
rs728494	0.85[CEU][hapmap];0.86[TSI][hapmap];0.84[EUR][1000 genomes]
rs728495	0.93[CEU][hapmap];0.90[TSI][hapmap];0.87[EUR][1000 genomes]
rs728498	0.86[CEU][hapmap];0.84[EUR][1000 genomes]
rs757598	0.90[ASN][1000 genomes]
rs758235	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs758236	0.93[CEU][hapmap];0.95[TSI][hapmap];0.87[EUR][1000 genomes]
rs8003097	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs8004427	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8011972	1.00[CEU][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs8014500	0.93[CEU][hapmap];0.94[EUR][1000 genomes]
rs8017353	0.90[ASN][1000 genomes]
rs917392	0.93[CEU][hapmap];0.91[EUR][1000 genomes]
rs991890	0.86[CEU][hapmap];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530794	chr14:72113818-73034008	Enhancers Bivalent/Poised TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
2	nsv948800	chr14:72462557-73150701	Enhancers Bivalent Enhancer Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4902969	RGS6	cis	Thyroid	GTEx

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:72467000-72471000	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr14:72468000-72470400	Weak transcription	Fetal Muscle Leg	muscle
3	chr14:72468000-72470400	Weak transcription	Left Ventricle	heart
4	chr14:72470000-72470600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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