Variant report

Variant	rs4903577
Chromosome Location	chr14:77847258-77847259
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:77847001..77849955-chr14:77855644..77857264,2	MCF-7	breast:
2	chr14:77845197..77848053-chr14:77848920..77850608,2	MCF-7	breast:
3	chr14:77845376..77847712-chr14:77870316..77871954,2	MCF-7	breast:

Extended variants
information (count: 48 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10133896	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1061629	0.81[EUR][1000 genomes]
rs11159258	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11159259	0.85[EUR][1000 genomes]
rs11159261	0.82[EUR][1000 genomes]
rs11623826	0.84[EUR][1000 genomes]
rs11625365	0.84[EUR][1000 genomes]
rs11627016	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11844594	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12101153	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12432247	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12435136	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12885869	0.82[EUR][1000 genomes]
rs12889722	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs147316	0.85[EUR][1000 genomes]
rs176766	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs176767	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs176768	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs176772	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs176773	0.86[EUR][1000 genomes]
rs176778	0.85[EUR][1000 genomes]
rs176781	0.85[EUR][1000 genomes]
rs17824034	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2091916	0.83[EUR][1000 genomes]
rs2193595	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2242619	0.85[EUR][1000 genomes]
rs2364156	0.82[EUR][1000 genomes]
rs35881785	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4223	0.85[EUR][1000 genomes]
rs4369582	0.83[EUR][1000 genomes]
rs4575469	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4899654	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4899655	0.84[EUR][1000 genomes]
rs4903576	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4903579	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4903580	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6574372	0.84[EUR][1000 genomes]
rs66466131	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7150718	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs8005759	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs8006688	0.81[EUR][1000 genomes]
rs8016070	0.81[EUR][1000 genomes]
rs8016576	0.83[EUR][1000 genomes]
rs8018711	0.81[EUR][1000 genomes]
rs8018808	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs963283	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431017	chr14:76938089-77854647	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	107 gene(s)	inside rSNPs	diseases
2	nsv902107	chr14:77790416-77871777	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4903577	TMED8	cis	lung	GTEx

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:77844200-77848600	Weak transcription	Psoas Muscle	Psoas
2	chr14:77844200-77849400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr14:77844200-77849400	Weak transcription	Fetal Intestine Small	intestine
4	chr14:77844400-77847800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr14:77844400-77847800	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr14:77844400-77849200	Weak transcription	Fetal Intestine Large	intestine
7	chr14:77844400-77855600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr14:77844400-77862200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr14:77847000-77848000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr14:77847200-77847400	Enhancers	Monocytes-CD14+_RO01746	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links