Variant report

Variant	rs4910093
Chromosome Location	chr11:10120313-10120314
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:10118222..10120370-chr11:10313905..10316403,2	K562	blood:
2	chr11:10115225..10117024-chr11:10118634..10120787,3	K562	blood:

Variant related genes	Relation type
ENSG00000133812	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11042615	0.88[YRI][hapmap]
rs11042683	0.87[YRI][hapmap]
rs12417184	0.82[YRI][hapmap]
rs1470258	0.88[YRI][hapmap]
rs1822290	0.88[YRI][hapmap]
rs1822292	0.88[YRI][hapmap]
rs2044145	0.88[YRI][hapmap]
rs2044146	1.00[YRI][hapmap]
rs2083712	1.00[YRI][hapmap]
rs2083713	1.00[YRI][hapmap]
rs2920154	1.00[YRI][hapmap]
rs59140383	0.82[AFR][1000 genomes]
rs7935934	0.88[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933855	chr11:9645441-10130519	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10098600-10121800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr11:10110400-10121800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr11:10110400-10122200	Weak transcription	HSMM	muscle
4	chr11:10112400-10122000	Weak transcription	NHLF	lung
5	chr11:10114000-10123200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr11:10116800-10125400	Weak transcription	Ovary	ovary
7	chr11:10116800-10131000	Weak transcription	Gastric	stomach
8	chr11:10117200-10131000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr11:10117600-10120600	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr11:10117600-10122000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr11:10118200-10121800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr11:10118200-10125800	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr11:10118400-10123600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr11:10118800-10121800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr11:10118800-10125600	Weak transcription	Pancreas	Pancrea
16	chr11:10119400-10122400	ZNF genes & repeats	Fetal Lung	lung
17	chr11:10119600-10121800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr11:10119600-10121800	Weak transcription	Left Ventricle	heart
19	chr11:10119800-10125200	Weak transcription	Aorta	Aorta
20	chr11:10120000-10121800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr11:10120000-10121800	Weak transcription	Right Atrium	heart
22	chr11:10120000-10122800	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood

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