Variant report

Variant	rs4912173
Chromosome Location	chr1:58208267-58208268
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10493232	0.91[GIH][hapmap];0.85[TSI][hapmap];0.82[EUR][1000 genomes]
rs11577095	0.86[MEX][hapmap];0.84[AMR][1000 genomes]
rs1323822	0.91[GIH][hapmap];0.80[MEX][hapmap];0.85[TSI][hapmap];0.83[EUR][1000 genomes]
rs1323823	0.91[GIH][hapmap];0.80[MEX][hapmap];0.85[TSI][hapmap];0.83[EUR][1000 genomes]
rs1408139	0.91[GIH][hapmap];0.85[TSI][hapmap];0.82[EUR][1000 genomes]
rs3118041	0.83[CHB][hapmap]
rs3118043	0.83[CHB][hapmap]
rs3118045	0.83[CHB][hapmap]
rs3131729	0.89[CEU][hapmap];0.83[CHD][hapmap];0.86[JPT][hapmap];0.90[TSI][hapmap];0.85[EUR][1000 genomes]
rs7534106	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.87[JPT][hapmap];0.93[MEX][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015057	chr1:57976993-58793962	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv530017	chr1:58002290-58669736	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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