Variant report

Variant	rs4916198
Chromosome Location	chr1:172869082-172869083
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:172864444..172866529-chr1:172867768..172870761,3	K562	blood:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10489276	0.87[EUR][1000 genomes]
rs10912488	0.86[EUR][1000 genomes]
rs10912490	0.87[EUR][1000 genomes]
rs10912491	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12021711	0.86[EUR][1000 genomes]
rs12025176	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12037853	0.86[EUR][1000 genomes]
rs12047983	0.86[EUR][1000 genomes]
rs12403628	0.85[EUR][1000 genomes]
rs12411259	0.89[EUR][1000 genomes]
rs12728265	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12739009	0.87[EUR][1000 genomes]
rs12748081	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2157453	0.87[EUR][1000 genomes]
rs2157454	0.87[EUR][1000 genomes]
rs2187892	0.87[EUR][1000 genomes]
rs2213742	0.87[EUR][1000 genomes]
rs2213745	0.87[EUR][1000 genomes]
rs35715673	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4145468	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4916283	0.87[EUR][1000 genomes]
rs4916285	0.88[EUR][1000 genomes]
rs55724017	0.85[EUR][1000 genomes]
rs6425143	0.81[EUR][1000 genomes]
rs6425145	0.81[EUR][1000 genomes]
rs6425146	0.84[EUR][1000 genomes]
rs6661686	0.86[EUR][1000 genomes]
rs6672776	0.86[EUR][1000 genomes]
rs6699678	0.86[EUR][1000 genomes]
rs68143871	0.87[EUR][1000 genomes]
rs7517810	0.86[EUR][1000 genomes]
rs7527462	0.87[EUR][1000 genomes]
rs9286879	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv3587	chr1:172836950-172882218	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:172864800-172870000	Enhancers	HUVEC	blood vessel
2	chr1:172865000-172871200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr1:172865200-172870400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
4	chr1:172865200-172870400	Weak transcription	HSMMtube	muscle
5	chr1:172865200-172871400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr1:172865200-172872200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr1:172865200-172872200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr1:172865200-172875200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr1:172865400-172869600	Weak transcription	Dnd41	blood
10	chr1:172865600-172869400	Weak transcription	Primary T helper cells fromperipheralblood	blood
11	chr1:172865600-172869600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
12	chr1:172865600-172869600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
13	chr1:172865600-172869600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
14	chr1:172865600-172874600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
15	chr1:172865800-172875200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
16	chr1:172865800-172878400	Weak transcription	Placenta Amnion	Placenta Amnion
17	chr1:172867200-172871600	Weak transcription	NHEK	skin
18	chr1:172867200-172872200	Weak transcription	HMEC	breast
19	chr1:172867400-172871400	Weak transcription	Hela-S3	cervix
20	chr1:172867800-172871400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr1:172868000-172869600	Enhancers	Primary hematopoietic stem cells short term culture	blood
22	chr1:172868000-172870400	Enhancers	Primary T cells from cord blood	blood
23	chr1:172868200-172869600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
24	chr1:172868200-172870400	Enhancers	Primary T helper cells PMA-I stimulated	--
25	chr1:172868400-172869600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr1:172868400-172870800	Enhancers	Primary hematopoietic stem cells	blood
27	chr1:172868400-172871000	Weak transcription	HSMM	muscle
28	chr1:172868400-172871200	Weak transcription	NHDF-Ad	bronchial
29	chr1:172868600-172869600	Weak transcription	NHLF	lung
30	chr1:172868600-172870800	Enhancers	Primary B cells from peripheral blood	blood
31	chr1:172868600-172871400	Weak transcription	Muscle Satellite Cultured Cells	--
32	chr1:172868600-172872000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr1:172868600-172872200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr1:172868600-172872600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr1:172868800-172869200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr1:172868800-172869600	Enhancers	Primary B cells from cord blood	blood
37	chr1:172868800-172871400	Weak transcription	NH-A	brain
38	chr1:172868800-172871400	Weak transcription	Osteobl	bone
39	chr1:172868800-172872400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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