Variant report

Variant	rs4916264
Chromosome Location	chr1:172450760-172450761
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:172444678..172448407-chr1:172449595..172452783,4	MCF-7	breast:
2	chr1:172448573..172451341-chr1:172458163..172460914,3	K562	blood:
3	chr1:172448419..172451395-chr1:172454966..172457854,2	MCF-7	breast:
4	chr1:172442195..172443795-chr1:172449989..172451528,2	MCF-7	breast:
5	chr1:172443532..172455037-chr1:172498094..172506505,15	MCF-7	breast:
6	chr1:172448573..172451341-chr1:172458163..172460914,2	K562	blood:
7	chr1:172448493..172450937-chr1:172451011..172455135,3	K562	blood:

Variant related genes	Relation type
ENSG00000094975	Chromatin interaction

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs1009802	0.91[CEU][hapmap];0.80[MKK][hapmap];0.85[TSI][hapmap]
rs1009803	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1011731	0.90[CHB][hapmap];0.81[CHD][hapmap];0.82[JPT][hapmap]
rs1023479	0.90[CHB][hapmap];0.80[CHD][hapmap];0.82[JPT][hapmap]
rs10489284	0.90[CHB][hapmap];0.81[CHD][hapmap];0.82[JPT][hapmap]
rs10752944	0.90[CHB][hapmap];0.81[CHD][hapmap];0.82[JPT][hapmap]
rs10911654	0.82[JPT][hapmap]
rs10911684	0.90[CHB][hapmap];0.81[CHD][hapmap];0.82[JPT][hapmap]
rs10911792	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2001129	0.90[CHB][hapmap];0.82[JPT][hapmap]
rs2032528	1.00[ASW][hapmap];0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2032529	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2032530	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2213731	0.90[CHB][hapmap];0.82[JPT][hapmap]
rs2213732	0.80[CHB][hapmap];0.82[JPT][hapmap]
rs2227198	0.90[CHB][hapmap];0.81[CHD][hapmap];0.82[JPT][hapmap]
rs2227199	0.90[CHB][hapmap];0.82[JPT][hapmap]
rs2301453	0.90[CHB][hapmap];0.81[CHD][hapmap];0.82[JPT][hapmap]
rs3213564	0.90[CHB][hapmap];0.81[CHD][hapmap];0.82[JPT][hapmap]
rs3768445	0.90[CHB][hapmap];0.81[CHD][hapmap];0.82[JPT][hapmap]
rs4471302	0.90[CHB][hapmap];0.82[JPT][hapmap]
rs4504922	0.81[CHD][hapmap];0.82[JPT][hapmap]
rs4916251	0.90[CHB][hapmap];0.81[CHD][hapmap];0.82[JPT][hapmap]
rs4916262	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4916263	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4916265	0.84[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];0.97[TSI][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4916267	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs5029889	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs5029891	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6424894	0.90[CHB][hapmap];0.81[CHD][hapmap];0.82[JPT][hapmap]
rs6656400	0.87[CEU][hapmap]
rs6676665	0.90[CHB][hapmap];0.81[CHD][hapmap];0.82[JPT][hapmap]
rs6698987	0.90[CHB][hapmap];0.81[CHD][hapmap];0.82[JPT][hapmap]
rs714515	0.89[CHB][hapmap];0.81[CHD][hapmap];0.82[JPT][hapmap]
rs7518039	0.80[CHB][hapmap];0.82[JPT][hapmap]
rs7539972	0.80[CHB][hapmap];0.82[JPT][hapmap]
rs7551242	0.83[CEU][hapmap];0.85[TSI][hapmap]
rs9286854	0.90[CHB][hapmap];0.82[JPT][hapmap]
rs9425301	0.84[CEU][hapmap];0.90[CHB][hapmap];0.82[JPT][hapmap]
rs9425333	0.90[CEU][hapmap]
rs9425586	0.90[CHB][hapmap];0.81[CHD][hapmap];0.82[JPT][hapmap]
rs9425592	0.90[CHB][hapmap];0.81[CHD][hapmap];0.82[JPT][hapmap]
rs9425623	0.83[CEU][hapmap]
rs9425625	0.91[CEU][hapmap];0.85[TSI][hapmap]
rs9425627	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9425628	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs991790	0.80[CHB][hapmap];0.82[JPT][hapmap]

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:172444200-172456200	Weak transcription	Monocytes-CD14+_RO01746	blood
2	chr1:172445000-172452400	Weak transcription	Primary neutrophils fromperipheralblood	blood
3	chr1:172445800-172450800	Weak transcription	Fetal Intestine Large	intestine
4	chr1:172445800-172451000	Weak transcription	Fetal Intestine Small	intestine
5	chr1:172445800-172451600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr1:172446800-172451000	Weak transcription	A549	lung
7	chr1:172447600-172452800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr1:172448200-172452600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr1:172448200-172452800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr1:172448400-172452800	Weak transcription	HMEC	breast
11	chr1:172448600-172453200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr1:172448600-172453200	Weak transcription	NHEK	skin
13	chr1:172449800-172450800	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr1:172449800-172451600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr1:172449800-172453000	Weak transcription	Placenta	Placenta
16	chr1:172450000-172452800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
17	chr1:172450200-172456200	Weak transcription	Primary T cells from cord blood	blood
18	chr1:172450400-172450800	Weak transcription	HepG2	liver

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