Variant report

Variant	rs4916287
Chromosome Location	chr1:172880359-172880360
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10912501	0.86[EUR][1000 genomes]
rs10912502	0.83[EUR][1000 genomes]
rs12402215	0.86[EUR][1000 genomes]
rs12409216	0.83[EUR][1000 genomes]
rs12410129	0.85[EUR][1000 genomes]
rs12565596	0.87[EUR][1000 genomes]
rs12567579	0.85[EUR][1000 genomes]
rs1883475	0.90[EUR][1000 genomes]
rs2051629	0.90[EUR][1000 genomes]
rs2187893	0.90[EUR][1000 genomes]
rs2206363	0.82[EUR][1000 genomes]
rs2206365	0.86[EUR][1000 genomes]
rs2206366	0.85[EUR][1000 genomes]
rs4916288	0.90[EUR][1000 genomes]
rs4916289	0.86[EUR][1000 genomes]
rs4916290	0.85[EUR][1000 genomes]
rs6668693	0.90[EUR][1000 genomes]
rs7539951	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv3587	chr1:172836950-172882218	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:172879200-172881800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr1:172879400-172884200	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr1:172879600-172881400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr1:172879600-172881400	Weak transcription	NHEK	skin
5	chr1:172879600-172881400	Weak transcription	NHLF	lung
6	chr1:172879600-172881800	Weak transcription	HSMMtube	muscle
7	chr1:172879800-172881000	Enhancers	HUVEC	blood vessel
8	chr1:172880000-172881200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr1:172880000-172881800	Weak transcription	A549	lung
10	chr1:172880000-172883800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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