Variant report

Variant	rs4916288
Chromosome Location	chr1:172884872-172884873
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10798242	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10798244	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10912491	0.97[ASN][1000 genomes]
rs10912497	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10912501	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10912502	0.93[EUR][1000 genomes]
rs12025176	0.97[ASN][1000 genomes]
rs12035082	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12037203	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12037606	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12088638	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12402215	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12407389	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12409216	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12410129	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12411259	0.81[ASN][1000 genomes]
rs12565596	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12567579	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12728265	0.95[ASN][1000 genomes]
rs12739009	1.00[JPT][hapmap]
rs12748081	0.97[ASN][1000 genomes]
rs1883475	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1894636	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2051629	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2187893	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2206363	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2206365	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2206366	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2213746	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2227203	0.82[ASN][1000 genomes]
rs2422257	1.00[JPT][hapmap]
rs2422260	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs35715673	0.97[ASN][1000 genomes]
rs4145468	0.97[ASN][1000 genomes]
rs4145469	0.95[CEU][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4916199	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4916285	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs4916286	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4916287	0.90[EUR][1000 genomes]
rs4916289	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4916290	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6668693	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6674470	0.80[EUR][1000 genomes]
rs6688532	0.95[CEU][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7527986	1.00[JPT][hapmap]
rs7539319	0.81[CEU][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs7539951	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs926472	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs926473	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs926474	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:172882200-172885800	Weak transcription	Aorta	Aorta
2	chr1:172882600-172885200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr1:172882800-172889400	Enhancers	HUVEC	blood vessel
4	chr1:172883000-172889600	Enhancers	NHLF	lung
5	chr1:172883200-172885000	Enhancers	Colon Smooth Muscle	Colon
6	chr1:172883400-172888200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr1:172883400-172888400	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr1:172883400-172889200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr1:172883400-172889400	Enhancers	NHDF-Ad	bronchial
10	chr1:172883600-172885000	Enhancers	NH-A	brain
11	chr1:172883600-172885200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr1:172883600-172885400	Enhancers	Stomach Smooth Muscle	stomach
13	chr1:172883600-172886600	Enhancers	A549	lung
14	chr1:172883600-172886800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr1:172883600-172887000	Enhancers	Muscle Satellite Cultured Cells	--
16	chr1:172883600-172888200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr1:172883600-172888200	Enhancers	Osteobl	bone
18	chr1:172883600-172889400	Enhancers	HMEC	breast
19	chr1:172883600-172890400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr1:172883800-172886400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr1:172883800-172890600	Enhancers	HSMMtube	muscle
22	chr1:172884000-172889600	Enhancers	HSMM	muscle
23	chr1:172884200-172887000	Enhancers	Placenta Amnion	Placenta Amnion
24	chr1:172884400-172887000	Enhancers	NHEK	skin
25	chr1:172884400-172888400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr1:172884600-172886400	Weak transcription	Hela-S3	cervix
27	chr1:172884800-172887000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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