Variant report

Variant	rs4917586
Chromosome Location	chr10:112545409-112545410
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:112543369..112546703-chr10:112631384..112633232,3	MCF-7	breast:
2	chr10:112545095..112547937-chr10:112677564..112679926,2	MCF-7	breast:
3	chr10:112540847..112543782-chr10:112544019..112546806,2	K562	blood:
4	chr10:112542690..112545660-chr20:19738025..19740725,2	MCF-7	breast:
5	chr10:112544055..112547895-chr10:112548312..112552484,5	K562	blood:

Variant related genes	Relation type
ENSG00000233895	Chromatin interaction
ENSG00000150593	Chromatin interaction
ENSG00000203497	Chromatin interaction
ENSG00000214413	Chromatin interaction
ENSG00000268628	Chromatin interaction
ENSG00000108061	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11195333	1.00[YRI][hapmap]
rs1124236	1.00[EUR][1000 genomes]
rs12098489	1.00[EUR][1000 genomes]
rs12245520	1.00[YRI][hapmap]
rs1547785	1.00[EUR][1000 genomes]
rs17127719	1.00[EUR][1000 genomes]
rs17127727	1.00[EUR][1000 genomes]
rs17127730	1.00[EUR][1000 genomes]
rs1890923	1.00[EUR][1000 genomes]
rs57223126	1.00[EUR][1000 genomes]
rs6585005	1.00[EUR][1000 genomes]
rs7075052	1.00[EUR][1000 genomes]
rs7100718	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045608	chr10:112524813-112677557	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:112538400-112548000	Weak transcription	Stomach Mucosa	stomach
2	chr10:112539200-112548000	Weak transcription	Fetal Brain Male	brain
3	chr10:112539600-112548800	Weak transcription	Colon Smooth Muscle	Colon
4	chr10:112540600-112546400	Genic enhancers	Left Ventricle	heart
5	chr10:112540800-112562400	Weak transcription	Gastric	stomach
6	chr10:112541200-112545800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr10:112541400-112546000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr10:112541800-112546000	Weak transcription	Fetal Muscle Trunk	muscle
9	chr10:112542200-112545800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr10:112542400-112546200	Genic enhancers	Skeletal Muscle Female	skeletal muscle
11	chr10:112542400-112546400	Enhancers	Primary T cells fromperipheralblood	blood
12	chr10:112542400-112550400	Enhancers	Pancreas	Pancrea
13	chr10:112542600-112545800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr10:112542600-112546800	Enhancers	Primary T cells from cord blood	blood
15	chr10:112542800-112546800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
16	chr10:112543000-112546000	Genic enhancers	Fetal Heart	heart
17	chr10:112543400-112548000	Weak transcription	Fetal Stomach	stomach
18	chr10:112543400-112554800	Weak transcription	Psoas Muscle	Psoas
19	chr10:112543600-112546000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr10:112543800-112546000	Enhancers	Pancreatic Islets	Pancreatic Islet
21	chr10:112543800-112548600	Weak transcription	Fetal Brain Female	brain
22	chr10:112544200-112546000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr10:112544200-112546000	Weak transcription	Brain Substantia Nigra	brain
24	chr10:112544200-112554200	Weak transcription	HSMMtube	muscle
25	chr10:112544400-112545600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr10:112544400-112545800	Weak transcription	Cortex derived primary cultured neurospheres	brain
27	chr10:112544400-112546000	Genic enhancers	Skeletal Muscle Male	skeletal muscle
28	chr10:112544400-112548000	Weak transcription	Brain Cingulate Gyrus	brain
29	chr10:112544400-112552400	Weak transcription	Brain Angular Gyrus	brain
30	chr10:112544600-112545800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
31	chr10:112544600-112547600	Enhancers	Right Ventricle	heart
32	chr10:112544600-112550000	Weak transcription	Stomach Smooth Muscle	stomach
33	chr10:112544800-112546600	Enhancers	Lung	lung
34	chr10:112545000-112545800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr10:112545000-112545800	Weak transcription	Right Atrium	heart
36	chr10:112545000-112545800	Weak transcription	K562	blood
37	chr10:112545000-112546200	Weak transcription	Primary T helper cells PMA-I stimulated	--
38	chr10:112545000-112548000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr10:112545000-112552200	Weak transcription	Brain Anterior Caudate	brain
40	chr10:112545200-112545600	Weak transcription	Fetal Thymus	thymus
41	chr10:112545200-112546000	Weak transcription	Aorta	Aorta
42	chr10:112545200-112546000	Bivalent Enhancer	HepG2	liver
43	chr10:112545200-112546600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr10:112545200-112546600	Enhancers	Esophagus	oesophagus
45	chr10:112545200-112553600	Enhancers	Fetal Lung	lung
46	chr10:112545400-112546000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
47	chr10:112545400-112546800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links