Variant report

Variant	rs4930727
Chromosome Location	chr12:124348943-124348944
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10773041	0.97[ASN][1000 genomes]
rs10773043	0.93[EUR][1000 genomes]
rs10773046	0.88[ASN][1000 genomes]
rs10773047	0.85[ASN][1000 genomes]
rs10846562	0.81[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs10846564	0.97[ASN][1000 genomes]
rs10846566	0.94[EUR][1000 genomes]
rs10846567	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10846570	0.87[ASN][1000 genomes]
rs10846571	0.87[ASN][1000 genomes]
rs10846572	0.87[ASN][1000 genomes]
rs10846573	0.87[ASN][1000 genomes]
rs10846574	0.82[ASN][1000 genomes]
rs11057378	0.88[EUR][1000 genomes]
rs11057381	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11057383	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11057388	0.87[ASN][1000 genomes]
rs11057389	0.87[ASN][1000 genomes]
rs11057390	0.88[ASN][1000 genomes]
rs12228611	0.92[EUR][1000 genomes]
rs12306328	0.87[ASN][1000 genomes]
rs12307524	0.87[ASN][1000 genomes]
rs1317386	0.89[ASN][1000 genomes]
rs1882489	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1922258	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2341779	0.86[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs4390427	0.90[ASN][1000 genomes]
rs6488905	0.86[ASN][1000 genomes]
rs6488907	0.97[ASN][1000 genomes]
rs7296123	0.87[ASN][1000 genomes]
rs7297429	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7300037	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7303634	0.88[ASN][1000 genomes]
rs7313897	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7314278	0.87[ASN][1000 genomes]
rs7314335	0.87[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs7314963	0.93[EUR][1000 genomes]
rs7959519	0.97[ASN][1000 genomes]
rs7977713	0.82[ASN][1000 genomes]
rs9669530	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498024	chr12:123994372-124459856	Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	63 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:124331400-124352800	Weak transcription	Fetal Brain Female	brain

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