Variant report

Variant	rs4935006
Chromosome Location	chr10:52547505-52547506
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10761546	0.90[ASN][1000 genomes]
rs10761548	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10821706	0.83[ASN][1000 genomes]
rs10821825	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10821846	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10821854	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10821859	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10994489	0.88[ASN][1000 genomes]
rs10994492	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10994504	0.88[ASN][1000 genomes]
rs12358745	0.88[ASN][1000 genomes]
rs16751	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3802531	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4245009	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4268458	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4531415	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4550168	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4617537	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4935007	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4935191	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4935192	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56033380	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs61858572	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6479701	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7074369	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7089428	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7089955	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7895606	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7913937	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7917358	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035197	chr10:52446582-52622349	Flanking Active TSS Active TSS Weak transcription Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:52547200-52548000	Enhancers	iPS-15b Cell Line	embryonic stem cell
2	chr10:52547400-52547800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
3	chr10:52547400-52548000	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr10:52547400-52548000	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
5	chr10:52547400-52548200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr10:52547400-52548400	Enhancers	H1 Cell Line	embryonic stem cell
7	chr10:52547400-52548800	Enhancers	Stomach Mucosa	stomach
8	chr10:52547400-52549200	Enhancers	iPS-20b Cell Line	embryonic stem cell

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