Variant report

Variant	rs4935011
Chromosome Location	chr10:52842806-52842807
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10822178	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10822190	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12355844	0.90[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2339673	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2339678	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2879523	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2879547	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4603249	0.96[EUR][1000 genomes]
rs4935010	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4935214	0.82[EUR][1000 genomes]
rs4935216	0.83[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs4935220	0.80[EUR][1000 genomes]
rs4935221	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4935228	0.94[EUR][1000 genomes]
rs7904024	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9414823	0.96[EUR][1000 genomes]
rs9415718	0.96[EUR][1000 genomes]
rs9415721	0.96[EUR][1000 genomes]
rs9415730	0.93[EUR][1000 genomes]
rs987633	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831873	chr10:52710610-52899540	Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv895394	chr10:52793177-52866503	Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1036645	chr10:52804961-53159076	Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:52836400-52847400	Weak transcription	Right Ventricle	heart
2	chr10:52837200-52843000	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr10:52837200-52849600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr10:52839000-52844000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr10:52839600-52843000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr10:52840000-52843200	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr10:52840400-52852200	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr10:52840600-52843000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr10:52840600-52843400	Weak transcription	Fetal Kidney	kidney
10	chr10:52840600-52843400	Weak transcription	Fetal Lung	lung
11	chr10:52841400-52843000	Weak transcription	Aorta	Aorta
12	chr10:52842000-52844600	Weak transcription	Fetal Muscle Trunk	muscle
13	chr10:52842400-52843000	Enhancers	Skeletal Muscle Female	skeletal muscle
14	chr10:52842400-52843200	Enhancers	ES-I3 Cell Line	embryonic stem cell
15	chr10:52842600-52843000	Enhancers	iPS-20b Cell Line	embryonic stem cell
16	chr10:52842600-52843000	Enhancers	Breast Myoepithelial Primary Cells	Breast
17	chr10:52842600-52843000	Enhancers	Colon Smooth Muscle	Colon
18	chr10:52842600-52843800	Active TSS	Stomach Smooth Muscle	stomach
19	chr10:52842600-52844000	Enhancers	iPS-15b Cell Line	embryonic stem cell
20	chr10:52842600-52844000	Enhancers	Rectal Smooth Muscle	rectum
21	chr10:52842600-52844200	Enhancers	H1 Cell Line	embryonic stem cell
22	chr10:52842800-52843000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
23	chr10:52842800-52843000	Enhancers	HUES48 Cell Line	embryonic stem cell
24	chr10:52842800-52843000	Enhancers	Brain Angular Gyrus	brain
25	chr10:52842800-52843000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
26	chr10:52842800-52843200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr10:52842800-52843200	Enhancers	HUES6 Cell Line	embryonic stem cell
28	chr10:52842800-52843400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
29	chr10:52842800-52843400	Enhancers	NHDF-Ad	bronchial
30	chr10:52842800-52843600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr10:52842800-52843600	Enhancers	H9 Cell Line	embryonic stem cell
32	chr10:52842800-52843600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr10:52842800-52843600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
34	chr10:52842800-52843600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr10:52842800-52843600	Enhancers	Fetal Muscle Leg	muscle
36	chr10:52842800-52843600	Enhancers	Left Ventricle	heart
37	chr10:52842800-52843600	Enhancers	Psoas Muscle	Psoas
38	chr10:52842800-52843800	Enhancers	NHLF	lung
39	chr10:52842800-52844000	Enhancers	HUES64 Cell Line	embryonic stem cell
40	chr10:52842800-52844000	Enhancers	Fetal Intestine Large	intestine
41	chr10:52842800-52844000	Enhancers	Fetal Intestine Small	intestine
42	chr10:52842800-52844000	Enhancers	Fetal Stomach	stomach

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