Variant report

Variant	rs4935096
Chromosome Location	chr10:55588484-55588485
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10740556	0.81[CEU][hapmap]
rs10763010	0.80[CEU][hapmap]
rs10763011	0.81[CEU][hapmap]
rs10825115	0.81[CEU][hapmap]
rs10825117	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10825119	0.88[CEU][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10825132	0.82[ASN][1000 genomes]
rs10825133	0.83[ASN][1000 genomes]
rs11003871	0.81[CEU][hapmap];0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11003872	0.80[CEU][hapmap];0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11003874	0.81[CEU][hapmap];0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11003876	0.92[CEU][hapmap]
rs12263108	0.88[ASN][1000 genomes]
rs12763311	1.00[JPT][hapmap]
rs12778839	1.00[JPT][hapmap]
rs16913796	1.00[JPT][hapmap]
rs16937824	1.00[JPT][hapmap]
rs1807888	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1900415	0.88[CEU][hapmap];0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1900417	0.95[CEU][hapmap]
rs1900418	0.92[CEU][hapmap]
rs1900419	0.92[CEU][hapmap]
rs1900455	0.92[CEU][hapmap];0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2254115	1.00[JPT][hapmap]
rs2593102	1.00[JPT][hapmap]
rs2610922	1.00[JPT][hapmap]
rs4310525	0.92[CEU][hapmap]
rs4417175	0.81[CEU][hapmap]
rs4417176	0.84[CEU][hapmap]
rs4519000	0.88[ASN][1000 genomes]
rs4935472	0.92[CEU][hapmap]
rs4935473	0.92[CEU][hapmap]
rs6481042	0.92[CEU][hapmap]
rs7074365	0.81[CEU][hapmap];0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7089209	0.80[CEU][hapmap]
rs766868	0.81[CEU][hapmap]
rs7914433	0.84[ASN][1000 genomes]
rs7916446	0.92[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1847684	chr10:55371601-55638740	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	esv1842975	chr10:55378668-55736655	ZNF genes & repeats Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv949692	chr10:55502542-55893206	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv895429	chr10:55564355-55736655	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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