Variant report

Variant	rs4935194
Chromosome Location	chr10:52608657-52608658
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10508933	0.96[JPT][hapmap]
rs10821876	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10821887	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10821888	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11591939	0.96[CHB][hapmap];0.87[ASN][1000 genomes]
rs11598887	0.95[JPT][hapmap]
rs12570156	0.81[ASN][1000 genomes]
rs12768916	0.95[CHB][hapmap];0.86[ASN][1000 genomes]
rs12769066	0.80[ASN][1000 genomes]
rs12783029	0.95[JPT][hapmap]
rs16910313	0.80[CHB][hapmap];0.80[ASN][1000 genomes]
rs4347324	0.96[JPT][hapmap]
rs4459236	0.80[CHB][hapmap];0.80[ASN][1000 genomes]
rs4460764	0.95[JPT][hapmap]
rs7068127	0.84[CEU][hapmap];0.83[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035197	chr10:52446582-52622349	Flanking Active TSS Active TSS Weak transcription Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:52580400-52643200	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr10:52585200-52617200	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr10:52594800-52617200	Weak transcription	Duodenum Mucosa	Duodenum
4	chr10:52598200-52622400	Weak transcription	Fetal Intestine Small	intestine
5	chr10:52602800-52619200	Weak transcription	Fetal Intestine Large	intestine
6	chr10:52605600-52612000	Weak transcription	Pancreas	Pancrea
7	chr10:52606600-52609600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr10:52606600-52610600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr10:52606800-52610200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr10:52607000-52609600	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr10:52607000-52609800	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr10:52607000-52610400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr10:52607000-52610400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
14	chr10:52607400-52610000	Weak transcription	HUES64 Cell Line	embryonic stem cell
15	chr10:52607800-52609000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr10:52608200-52608800	Strong transcription	HepG2	liver
17	chr10:52608400-52612000	Strong transcription	Liver	Liver
18	chr10:52608600-52609000	Enhancers	Pancreatic Islets	Pancreatic Islet
19	chr10:52608600-52610200	Weak transcription	HMEC	breast

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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