Variant report

Variant	rs4936271
Chromosome Location	chr11:113318705-113318706
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	JUND	chr11:113318515-113319059	K562	blood:	n/a	chr11:113318868-113318878 chr11:113318868-113318878 chr11:113318868-113318878 chr11:113318869-113318878 chr11:113318868-113318878 chr11:113318867-113318879
2	JUN	chr11:113318183-113319268	K562	blood:	n/a	chr11:113318868-113318878 chr11:113318868-113318878 chr11:113318868-113318878 chr11:113318869-113318878 chr11:113318868-113318878 chr11:113318867-113318879
3	FOS	chr11:113318679-113319365	MCF10A-Er-Src	breast:	n/a	chr11:113318868-113318878 chr11:113318868-113318878 chr11:113318867-113318878 chr11:113318868-113318878 chr11:113318869-113318878 chr11:113318868-113318878 chr11:113318867-113318879
4	ATF1	chr11:113318698-113319075	K562	blood:	n/a	n/a
5	STAT3	chr11:113318699-113319313	MCF10A-Er-Src	breast:	n/a	chr11:113318821-113318828 chr11:113319130-113319141 chr11:113318896-113318904 chr11:113319129-113319143
6	POLR2A	chr11:113316780-113319203	MCF10A-Er-Src	breast:	n/a	n/a
7	MYC	chr11:113318685-113319294	MCF10A-Er-Src	breast:	n/a	n/a
8	FOS	chr11:113318629-113319378	MCF10A-Er-Src	breast:	n/a	chr11:113318868-113318878 chr11:113318868-113318878 chr11:113318867-113318878 chr11:113318868-113318878 chr11:113318869-113318878 chr11:113318868-113318878 chr11:113318867-113318879
9	RCOR1	chr11:113318405-113319079	K562	blood:	n/a	n/a
10	GABPA	chr11:113318670-113318981	K562	blood:	n/a	n/a
11	FOS	chr11:113318677-113319130	MCF10A-Er-Src	breast:	n/a	chr11:113318868-113318878 chr11:113318868-113318878 chr11:113318867-113318878 chr11:113318868-113318878 chr11:113318869-113318878 chr11:113318868-113318878 chr11:113318867-113318879
12	JUN	chr11:113318686-113319069	K562	blood:	n/a	chr11:113318868-113318878 chr11:113318868-113318878 chr11:113318868-113318878 chr11:113318869-113318878 chr11:113318868-113318878 chr11:113318867-113318879
13	KAP1	chr11:113318578-113319091	U2OS	brain:	n/a	chr11:113318870-113318879
14	REST	chr11:113318384-113319092	PFSK-1	brain:	n/a	chr11:113319012-113319025
15	KAP1	chr11:113318515-113319164	HEK293	kidney:	n/a	chr11:113318870-113318879
16	FOS	chr11:113318681-113319286	MCF10A-Er-Src	breast:	n/a	chr11:113318868-113318878 chr11:113318868-113318878 chr11:113318867-113318878 chr11:113318868-113318878 chr11:113318869-113318878 chr11:113318868-113318878 chr11:113318867-113318879

Variant related genes	Relation type
DRD2	TF binding region

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11214613	0.82[CHB][hapmap]
rs11601054	0.83[TSI][hapmap]
rs4245146	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.89[MKK][hapmap];0.98[TSI][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4245147	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.88[MKK][hapmap];0.95[TSI][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4245148	0.88[CHB][hapmap];0.84[JPT][hapmap];0.85[ASN][1000 genomes]
rs4274224	0.87[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.92[MKK][hapmap];0.95[TSI][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4460839	0.86[CHB][hapmap];0.88[JPT][hapmap];0.85[ASN][1000 genomes]
rs4581480	0.88[CHB][hapmap];0.91[CHD][hapmap];0.90[JPT][hapmap];0.83[ASN][1000 genomes]
rs4630328	0.81[TSI][hapmap]
rs4936270	0.88[CHB][hapmap];0.91[CHD][hapmap];0.90[JPT][hapmap];0.85[ASN][1000 genomes]
rs4936272	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4936274	0.82[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv556444	chr11:113234432-113383394	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	nsv898394	chr11:113298339-113341391	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region miRNA	3 gene(s)	inside rSNPs	diseases
3	esv1821565	chr11:113306765-113331532	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:113313400-113318800	Weak transcription	Brain Anterior Caudate	brain
2	chr11:113315000-113320600	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr11:113316000-113320200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr11:113316200-113319800	Enhancers	HMEC	breast
5	chr11:113316400-113319600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr11:113316400-113319600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr11:113316400-113320200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr11:113318400-113318800	Enhancers	Lung	lung
9	chr11:113318400-113319200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr11:113318400-113319400	Enhancers	Osteobl	bone
11	chr11:113318400-113319600	Enhancers	HSMM	muscle
12	chr11:113318400-113319600	Enhancers	HSMMtube	muscle
13	chr11:113318400-113319600	Enhancers	NH-A	brain
14	chr11:113318400-113319800	Enhancers	NHEK	skin
15	chr11:113318400-113320000	Enhancers	Placenta	Placenta
16	chr11:113318600-113318800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
17	chr11:113318600-113318800	Enhancers	Muscle Satellite Cultured Cells	--
18	chr11:113318600-113319000	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr11:113318600-113319200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr11:113318600-113319200	Enhancers	K562	blood

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