Variant report

Variant	rs4939033
Chromosome Location	chr11:56104645-56104646
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10896227	0.88[ASN][1000 genomes]
rs10896325	0.86[ASN][1000 genomes]
rs10896345	0.86[ASN][1000 genomes]
rs11227964	0.86[ASN][1000 genomes]
rs12277883	0.86[ASN][1000 genomes]
rs12285921	0.84[ASN][1000 genomes]
rs12786642	0.81[ASN][1000 genomes]
rs1573512	0.86[ASN][1000 genomes]
rs1945228	0.86[ASN][1000 genomes]
rs2128132	0.91[ASN][1000 genomes]
rs2220001	0.88[ASN][1000 genomes]
rs34434887	0.86[ASN][1000 genomes]
rs4420287	0.86[ASN][1000 genomes]
rs4938829	0.81[ASN][1000 genomes]
rs4939037	0.86[ASN][1000 genomes]
rs4939054	0.81[ASN][1000 genomes]
rs594113	0.84[ASN][1000 genomes]
rs594568	0.82[ASN][1000 genomes]
rs597102	0.84[ASN][1000 genomes]
rs610822	0.84[ASN][1000 genomes]
rs612885	0.84[ASN][1000 genomes]
rs615231	0.84[ASN][1000 genomes]
rs621826	0.84[ASN][1000 genomes]
rs624412	0.84[ASN][1000 genomes]
rs634955	0.82[ASN][1000 genomes]
rs637202	0.84[ASN][1000 genomes]
rs647027	0.84[ASN][1000 genomes]
rs647058	0.84[ASN][1000 genomes]
rs647402	0.82[ASN][1000 genomes]
rs652537	0.82[ASN][1000 genomes]
rs6591233	0.91[ASN][1000 genomes]
rs6591310	0.86[ASN][1000 genomes]
rs660788	0.84[ASN][1000 genomes]
rs663964	0.82[ASN][1000 genomes]
rs669453	0.83[ASN][1000 genomes]
rs672711	0.84[ASN][1000 genomes]
rs675120	0.84[ASN][1000 genomes]
rs675991	0.84[ASN][1000 genomes]
rs680490	0.82[ASN][1000 genomes]
rs683539	0.84[ASN][1000 genomes]
rs7105808	0.86[ASN][1000 genomes]
rs7116573	0.86[ASN][1000 genomes]
rs7126732	0.86[ASN][1000 genomes]
rs7131637	0.85[ASN][1000 genomes]
rs7940239	0.91[ASN][1000 genomes]
rs871301	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv975114	chr11:55751535-56124251	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
2	nsv1044859	chr11:55900482-56121727	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
3	nsv1050024	chr11:55900482-56518943	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	52 gene(s)	inside rSNPs	diseases
4	nsv497854	chr11:55917298-56537994	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	50 gene(s)	inside rSNPs	diseases
5	nsv832161	chr11:56046173-56166964	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
6	nsv555096	chr11:56084444-56235061	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	14 gene(s)	inside rSNPs	diseases
7	nsv555097	chr11:56084611-56235061	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:56097200-56104800	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr11:56104400-56105400	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
3	chr11:56104600-56105200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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