Variant report

Variant	rs4939117
Chromosome Location	chr11:56992412-56992413
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:56992366..56994767-chr11:57010638..57012947,2	K562	blood:
2	chr11:56992305..56993973-chr11:56996074..56998381,2	K562	blood:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11228958	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11604352	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2282625	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs35783847	0.80[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4938854	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs4939118	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915640	chr11:56814841-57139786	Weak transcription Transcr. at gene 5' and 3' Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv482317	chr11:56857026-57028631	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:56987200-56995200	Weak transcription	Left Ventricle	heart
2	chr11:56987600-57000800	Weak transcription	Spleen	Spleen
3	chr11:56988600-56992800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr11:56989600-56992800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr11:56989600-56997800	Weak transcription	Adipose Nuclei	Adipose
6	chr11:56991000-56992600	Enhancers	HSMMtube	muscle
7	chr11:56991000-56992800	Enhancers	HSMM	muscle
8	chr11:56991600-56992600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr11:56991800-56992600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr11:56991800-56992800	Flanking Active TSS	A549	lung
11	chr11:56992000-56992600	Enhancers	Brain Anterior Caudate	brain
12	chr11:56992200-56992600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr11:56992200-56992600	Enhancers	HMEC	breast
14	chr11:56992400-56992600	Flanking Active TSS	Muscle Satellite Cultured Cells	--
15	chr11:56992400-56992800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr11:56992400-56993000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr11:56992400-56995000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr11:56992400-56995800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr11:56992400-56995800	Weak transcription	HUES6 Cell Line	embryonic stem cell
20	chr11:56992400-56997400	Weak transcription	Brain Cingulate Gyrus	brain

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