Variant report

Variant	rs4943820
Chromosome Location	chr11:70896503-70896504
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:70893215..70895272-chr11:70896426..70897987,2	MCF-7	breast:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs11232452	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11232477	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11232508	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11232576	0.84[AMR][1000 genomes]
rs11232591	1.00[CEU][hapmap];0.90[CHB][hapmap];0.94[JPT][hapmap];0.80[AMR][1000 genomes]
rs11822742	1.00[EUR][1000 genomes]
rs11826649	1.00[EUR][1000 genomes]
rs3934693	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4072326	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4943871	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4944286	0.84[AMR][1000 genomes]
rs55656100	0.82[EUR][1000 genomes]
rs55690281	1.00[EUR][1000 genomes]
rs55712817	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55788978	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55836628	0.82[EUR][1000 genomes]
rs55897315	1.00[EUR][1000 genomes]
rs55928066	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56162839	1.00[EUR][1000 genomes]
rs56220831	0.82[EUR][1000 genomes]
rs56255416	1.00[EUR][1000 genomes]
rs56368604	1.00[EUR][1000 genomes]
rs57007124	1.00[EUR][1000 genomes]
rs58661988	0.82[EUR][1000 genomes]
rs58984468	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59417145	0.84[AMR][1000 genomes]
rs59894456	1.00[EUR][1000 genomes]
rs61037105	1.00[EUR][1000 genomes]
rs73521132	0.82[EUR][1000 genomes]
rs73521141	0.82[EUR][1000 genomes]
rs7944885	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048123	chr11:70795222-71231382	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:70891200-70903600	Weak transcription	Duodenum Mucosa	Duodenum
2	chr11:70891600-70901200	Weak transcription	Gastric	stomach
3	chr11:70891800-70908400	Weak transcription	A549	lung
4	chr11:70892000-70901600	Weak transcription	Liver	Liver
5	chr11:70892000-70913000	Weak transcription	Stomach Mucosa	stomach
6	chr11:70892400-70897800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr11:70892400-70898800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr11:70892400-70899000	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr11:70892600-70905800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr11:70892800-70900800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr11:70892800-70900800	Weak transcription	Pancreas	Pancrea
12	chr11:70892800-70915400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr11:70893000-70901400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr11:70893200-70915400	Weak transcription	H1 Cell Line	embryonic stem cell
15	chr11:70893800-70896800	Weak transcription	HepG2	liver
16	chr11:70894600-70901000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr11:70894800-70897600	Strong transcription	Fetal Intestine Small	intestine
18	chr11:70895800-70917000	Weak transcription	HUES6 Cell Line	embryonic stem cell
19	chr11:70896000-70897200	Enhancers	HSMM	muscle
20	chr11:70896200-70897000	Weak transcription	Muscle Satellite Cultured Cells	--
21	chr11:70896200-70897800	Strong transcription	Fetal Intestine Large	intestine
22	chr11:70896400-70898800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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