Variant report

Variant	rs4945072
Chromosome Location	chr11:76046108-76046109
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10736804	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10793152	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10793154	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10793155	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10899209	0.82[YRI][hapmap];0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10899211	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11236720	0.86[ASN][1000 genomes]
rs4945067	0.87[EUR][1000 genomes]
rs4945068	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4945069	0.87[EUR][1000 genomes]
rs4945071	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4945073	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4945074	0.85[EUR][1000 genomes]
rs4945075	0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4945076	0.84[EUR][1000 genomes]
rs7126625	0.83[EUR][1000 genomes]
rs7127175	0.81[EUR][1000 genomes]
rs7924921	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv524020	chr11:76033374-76047793	Bivalent/Poised TSS Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76039400-76048800	Weak transcription	Right Atrium	heart
2	chr11:76045000-76046600	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr11:76045600-76046800	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
4	chr11:76045800-76046600	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr11:76045800-76046800	ZNF genes & repeats	Primary monocytes fromperipheralblood	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links