Variant report

Variant	rs4945123
Chromosome Location	chr11:76647911-76647912
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 78 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:77)

rs_ID	r²[population]
rs10082568	0.89[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs10431154	0.89[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs10431181	0.89[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs10431182	0.89[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs10751264	0.91[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs10751267	0.97[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs10751268	0.97[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs10793206	0.91[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs10793207	0.90[AFR][1000 genomes]
rs10793209	0.91[AFR][1000 genomes]
rs10793210	0.83[AFR][1000 genomes]
rs10793211	0.97[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs10793212	0.97[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs10793213	0.89[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs10793216	0.84[AFR][1000 genomes]
rs10793217	0.89[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs10793218	0.89[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs10793219	0.89[AFR][1000 genomes]
rs10793220	0.84[AFR][1000 genomes]
rs10793221	0.83[AFR][1000 genomes]
rs10899294	0.82[AFR][1000 genomes]
rs10899295	0.82[AFR][1000 genomes]
rs10899297	0.81[AFR][1000 genomes]
rs10899315	0.91[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs10899316	0.89[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs10899320	0.81[AFR][1000 genomes]
rs10899321	0.93[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs10899325	0.81[AFR][1000 genomes]
rs10899327	0.97[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs10899328	0.96[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs10899329	0.96[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs10899330	0.89[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs10899332	0.89[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs11236977	0.82[AFR][1000 genomes]
rs11237023	0.91[AFR][1000 genomes]
rs11237025	0.96[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs11237027	0.89[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs11237029	0.83[AFR][1000 genomes]
rs11237035	0.89[AFR][1000 genomes]
rs11533271	0.87[AFR][1000 genomes]
rs11535857	0.84[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs12222825	0.89[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs12718490	0.84[AFR][1000 genomes]
rs12794575	0.82[AFR][1000 genomes]
rs12807735	0.89[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs1356455	0.93[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs1372046	0.81[AFR][1000 genomes]
rs1607285	0.96[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs1914599	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs1914600	0.96[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs1980204	0.91[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs1980205	0.80[AFR][1000 genomes]
rs2119456	0.87[AFR][1000 genomes]
rs2203755	0.91[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs4457775	0.91[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs4479014	0.91[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs4488228	0.91[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs4488229	0.91[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs4586198	0.83[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs4944128	0.95[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs4944129	0.95[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs4945124	0.97[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs4945125	0.86[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs55956901	0.85[AFR][1000 genomes]
rs6592687	0.89[AFR][1000 genomes]
rs7113290	0.82[AFR][1000 genomes]
rs7116872	0.82[AFR][1000 genomes]
rs7122736	0.84[AFR][1000 genomes]
rs7128770	0.84[AFR][1000 genomes]
rs7924605	0.89[AFR][1000 genomes]
rs7937883	0.87[AFR][1000 genomes]
rs7951501	0.91[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs938809	0.84[AFR][1000 genomes]
rs938810	0.84[AFR][1000 genomes]
rs9795229	0.84[AFR][1000 genomes]
rs9795281	0.82[AFR][1000 genomes]
rs9795388	0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519700	chr11:76637651-76709407	ZNF genes & repeats Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76631400-76649000	Weak transcription	Aorta	Aorta
2	chr11:76631400-76655000	Weak transcription	Primary B cells from cord blood	blood
3	chr11:76631400-76688400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr11:76631600-76657000	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr11:76631600-76670200	Weak transcription	Left Ventricle	heart
6	chr11:76631600-76671600	Weak transcription	Ovary	ovary
7	chr11:76638800-76651600	Weak transcription	Colonic Mucosa	Colon
8	chr11:76644000-76666400	Weak transcription	NHEK	skin
9	chr11:76644200-76653000	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr11:76645800-76649000	Weak transcription	Fetal Stomach	stomach
11	chr11:76645800-76683800	Weak transcription	Esophagus	oesophagus
12	chr11:76646000-76656600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr11:76646200-76649400	Weak transcription	Brain Substantia Nigra	brain
14	chr11:76646200-76650200	Weak transcription	Skeletal Muscle Female	skeletal muscle
15	chr11:76646200-76670600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
16	chr11:76646600-76651000	Strong transcription	Monocytes-CD14+_RO01746	blood
17	chr11:76646600-76655000	Weak transcription	Primary T cells from cord blood	blood
18	chr11:76646600-76688000	Weak transcription	HMEC	breast
19	chr11:76646800-76656600	Weak transcription	Lung	lung
20	chr11:76647000-76649400	Weak transcription	Brain Cingulate Gyrus	brain
21	chr11:76647000-76649800	Weak transcription	HUVEC	blood vessel
22	chr11:76647000-76670200	Weak transcription	Primary neutrophils fromperipheralblood	blood
23	chr11:76647200-76648400	Weak transcription	Adipose Nuclei	Adipose
24	chr11:76647200-76649000	Weak transcription	Fetal Intestine Small	intestine
25	chr11:76647200-76649000	Weak transcription	HepG2	liver
26	chr11:76647200-76649200	Weak transcription	Placenta	Placenta
27	chr11:76647200-76651400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
28	chr11:76647200-76651600	Weak transcription	Brain Angular Gyrus	brain
29	chr11:76647200-76651800	Weak transcription	HUES48 Cell Line	embryonic stem cell
30	chr11:76647200-76651800	Weak transcription	Cortex derived primary cultured neurospheres	brain
31	chr11:76647200-76652600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
32	chr11:76647200-76653200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
33	chr11:76647200-76653600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
34	chr11:76647200-76654200	Weak transcription	H1 Cell Line	embryonic stem cell
35	chr11:76647200-76655200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr11:76647200-76655200	Weak transcription	Brain Inferior Temporal Lobe	brain
37	chr11:76647200-76655400	Weak transcription	Primary hematopoietic stem cells	blood
38	chr11:76647200-76655400	Weak transcription	Duodenum Mucosa	Duodenum
39	chr11:76647200-76671600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr11:76647200-76673800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr11:76647200-76674800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
42	chr11:76647400-76648200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
43	chr11:76647400-76649600	Weak transcription	NHDF-Ad	bronchial
44	chr11:76647400-76649800	Weak transcription	A549	lung
45	chr11:76647400-76651800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
46	chr11:76647400-76653000	Weak transcription	HUES64 Cell Line	embryonic stem cell
47	chr11:76647400-76670000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
48	chr11:76647600-76648400	Weak transcription	Primary monocytes fromperipheralblood	blood
49	chr11:76647600-76649000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
50	chr11:76647600-76649000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links