Variant report

Variant	rs4945127
Chromosome Location	chr11:76682509-76682510
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 148 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:144)

rs_ID	r²[population]
rs10082568	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10431154	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10431181	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10431182	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10736811	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10736812	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10751263	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10751267	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10751268	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10751270	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10751271	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10793211	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10793212	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10793213	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10793214	0.80[EUR][1000 genomes]
rs10793215	0.80[EUR][1000 genomes]
rs10793216	0.81[EUR][1000 genomes]
rs10793217	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10793218	0.82[AMR][1000 genomes]
rs10793219	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10793220	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10793221	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10793223	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10793224	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10793225	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10793226	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10793227	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10793228	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10793229	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10793230	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10793231	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10793232	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10899303	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10899327	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10899328	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10899329	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10899330	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10899332	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10899333	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10899340	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10899341	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10899343	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10899344	0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11237025	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs11237027	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11237031	0.80[EUR][1000 genomes]
rs11237035	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11237036	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11237052	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12222825	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12223659	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12279946	0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12286501	0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12286600	0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12807735	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1356455	0.82[AMR][1000 genomes]
rs1517907	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1517908	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1517909	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1517910	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1589126	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1607285	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1607287	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1850544	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1878630	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1914599	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1914600	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1945083	0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1945086	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1969315	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1973714	0.84[ASN][1000 genomes]
rs2090524	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2119458	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2156770	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2826	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3740764	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3740765	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3740767	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3781697	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3824889	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3851191	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3914687	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4145048	0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4460836	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4586198	0.86[AMR][1000 genomes]
rs4944128	0.82[AMR][1000 genomes]
rs4944129	0.82[AMR][1000 genomes]
rs4944131	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4944132	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4944134	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4945124	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4945125	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4945129	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4945131	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4945132	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4945133	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs591043	0.83[ASN][1000 genomes]
rs6592678	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6592683	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6592684	0.80[EUR][1000 genomes]
rs6592687	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6592689	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6592690	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6592691	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6592692	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6592693	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6592694	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7103500	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7105694	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7107505	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7110305	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7110532	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7113647	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7113778	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7119492	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7121273	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7121920	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7122736	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7123496	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7123694	0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7123723	0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7127936	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7128038	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7128770	0.83[AMR][1000 genomes]
rs7129147	0.81[EUR][1000 genomes]
rs7129388	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7924613	0.80[ASN][1000 genomes]
rs7925135	0.80[ASN][1000 genomes]
rs7925652	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7925774	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7926122	0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7926409	0.91[EUR][1000 genomes]
rs7927367	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7927731	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7931646	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7931869	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7931894	0.80[ASN][1000 genomes]
rs7940782	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7940972	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7942574	0.80[EUR][1000 genomes]
rs7943913	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7950001	0.85[EUR][1000 genomes]
rs949339	0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs949340	0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519700	chr11:76637651-76709407	ZNF genes & repeats Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1042924	chr11:76659477-76709407	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1040833	chr11:76667160-76709407	Weak transcription Genic enhancers Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv396	chr11:76670116-76702745	Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76631400-76688400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr11:76645800-76683800	Weak transcription	Esophagus	oesophagus
3	chr11:76646600-76688000	Weak transcription	HMEC	breast
4	chr11:76657200-76688400	Weak transcription	Gastric	stomach
5	chr11:76660000-76710800	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr11:76665800-76688400	Weak transcription	Right Ventricle	heart
7	chr11:76666800-76695400	Weak transcription	NHEK	skin
8	chr11:76672200-76682600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr11:76672200-76697800	Weak transcription	Left Ventricle	heart
10	chr11:76672400-76696000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr11:76673000-76689600	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr11:76673800-76690400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chr11:76674000-76688600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
14	chr11:76674200-76683800	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr11:76674400-76696000	Weak transcription	Small Intestine	intestine
16	chr11:76675000-76683800	Weak transcription	Placenta	Placenta
17	chr11:76675000-76688600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr11:76675000-76689800	Weak transcription	Rectal Mucosa Donor 31	rectum
19	chr11:76675000-76691600	Weak transcription	Fetal Lung	lung
20	chr11:76675000-76721800	Weak transcription	Stomach Smooth Muscle	stomach
21	chr11:76675000-76725600	Weak transcription	A549	lung
22	chr11:76675000-76729600	Weak transcription	Brain Angular Gyrus	brain
23	chr11:76675200-76682600	Weak transcription	Cortex derived primary cultured neurospheres	brain
24	chr11:76675200-76682800	Weak transcription	Primary neutrophils fromperipheralblood	blood
25	chr11:76675200-76684000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr11:76675200-76688000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
27	chr11:76675200-76688000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr11:76675200-76688200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr11:76675400-76682800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr11:76675400-76688600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr11:76675400-76688800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
32	chr11:76675400-76689000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr11:76681600-76684200	Weak transcription	Duodenum Mucosa	Duodenum
34	chr11:76681800-76683400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr11:76681800-76683400	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
36	chr11:76682000-76683400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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